Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq11475 87.8 7e-13 seq10773 87.8 7e-13 seq14102 86.0 2e-12 seq12877 82.4 3e-11 >seq11475 Length=22225 Score = 87.8 bits (96), Expect = 7e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 8919 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 8860 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 8859 TGCTCTACCCCGC 8847 >seq10773 Length=30986 Score = 87.8 bits (96), Expect = 7e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 17871 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 17812 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 17811 TGCTCTACCCCGC 17799 >seq14102 Length=51791 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| | || Sbjct 3176 TGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGCT 3235 Query 50172 GCTCTACTCCGC 50183 ||||||| |||| Sbjct 3236 GCTCTACCCCGC 3247 >seq12877 Length=40778 Score = 82.4 bits (90), Expect = 3e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | |||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 6302 TTGCGGAGACATGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 6361 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 6362 TGCTCTACCCCGC 6374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181505966014656