Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_023549.1
Length=56789
Score E
Sequences producing significant alignments: (Bits) Value
seq11475 87.8 7e-13
seq10773 87.8 7e-13
seq14102 86.0 2e-12
seq12877 82.4 3e-11
>seq11475
Length=22225
Score = 87.8 bits (96), Expect = 7e-13
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170
|||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| | |
Sbjct 8919 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 8860
Query 50171 TGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 8859 TGCTCTACCCCGC 8847
>seq10773
Length=30986
Score = 87.8 bits (96), Expect = 7e-13
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170
|||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| | |
Sbjct 17871 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 17812
Query 50171 TGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 17811 TGCTCTACCCCGC 17799
>seq14102
Length=51791
Score = 86.0 bits (94), Expect = 2e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171
||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| | ||
Sbjct 3176 TGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGCT 3235
Query 50172 GCTCTACTCCGC 50183
||||||| ||||
Sbjct 3236 GCTCTACCCCGC 3247
>seq12877
Length=40778
Score = 82.4 bits (90), Expect = 3e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170
|||||||| | |||||||||||| | |||| ||| ||||||||| |||||||||| | |
Sbjct 6302 TTGCGGAGACATGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 6361
Query 50171 TGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 6362 TGCTCTACCCCGC 6374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 181505966014656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |