Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_023587.1
Length=189311
Score E
Sequences producing significant alignments: (Bits) Value
seq11475 508 7e-139
seq15224 277 2e-69
seq8938 158 1e-33
seq10333 132 6e-26
seq15824 120 4e-22
seq12877 120 4e-22
seq12771 104 3e-17
seq14024 95.1 1e-14
>seq11475
Length=22225
Score = 508 bits (562), Expect = 7e-139
Identities = 720/1006 (72%), Gaps = 6/1006 (1%)
Strand=Plus/Minus
Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008
||||||||||| | | | || || || || ||||| ||||||||||| || | ||
Sbjct 12873 TGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 12814
Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068
|||| ||||||| | || | || |||||| |||| || || | ||||| || |
Sbjct 12813 TTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTTTGTAACTTCAT 12754
Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGC 179126
|||| || ||||| | || ||||| ||| | ||||| ||| | ||||||| | |||||
Sbjct 12753 GGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGCAA--TTTCTTAACCGCAGC 12696
Query 179127 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 179186
|| || || |||||| || | | | || ||| | | | || ||||||||||| |
Sbjct 12695 CGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGGGTCCTGAAGC 12636
Query 179187 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCA 179246
|| || |||| || ||||| ||| | || || || |||| ||| || ||||| ||
Sbjct 12635 ACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCA 12576
Query 179247 CGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCG 179305
||||| |||| ||||| || || ||| | || || || ||||| || || ||| ||
Sbjct 12575 TGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCA 12516
Query 179306 GTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTAT 179365
| | || ||||| ||||| || || || | || || ||||| || || ||| |||||
Sbjct 12515 AT-TGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTAT 12457
Query 179366 TTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGG 179425
| || || || ||||| || ||||| |||||||||||||||| |||||||| || |
Sbjct 12456 TCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAG 12397
Query 179426 CGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTC 179485
| || ||| ||||| | || || || ||||| || || || ||||| || ||||| ||||
Sbjct 12396 CTATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGAACCCTTTTC 12337
Query 179486 ACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAA 179545
| |||||||||||||| ||| | |||| | |||||||| | ||||||||||| | |
Sbjct 12336 ATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTA 12277
Query 179546 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACT 179605
| ||||| ||||| || | || ||||| || ||||| ||||| || || ||
Sbjct 12276 CCGTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACC 12217
Query 179606 CTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCT 179665
| || |||| || || || ||||| ||||| || || |||||||||||||| || || |
Sbjct 12216 CAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTT 12157
Query 179666 TCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCA 179725
| |||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || |
Sbjct 12156 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 12097
Query 179726 TGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATG 179785
||| | ||| | | || |||| | | || || || | || || ||||| ||||
Sbjct 12096 CCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATG 12037
Query 179786 ATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAA 179845
| || || ||||| || | ||||| ||||||||||| || ||||| ||||| || |
Sbjct 12036 ACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCA 11977
Query 179846 AGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATG 179905
| || ||||| | |||||||| | ||||||||| |||| || ||||| || ||||
Sbjct 11976 AAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 11917
Query 179906 AAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951
||||| | || ||||| || || || ||||| |||| ||||| ||
Sbjct 11916 AAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 11871
>seq15224
Length=172684
Score = 277 bits (306), Expect = 2e-69
Identities = 307/407 (75%), Gaps = 2/407 (0%)
Strand=Plus/Plus
Query 177944 TGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTC 178002
|||||| || || || |||||||| || | || || ||||| | ||||||| | ||||
Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGT-TTTCTTGATCTATCCAATTGGTC 89376
Query 178003 AAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 178062
|||| || || |||| ||||||| | || || ||||||||||| |||| |||| |||
Sbjct 89377 AAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTG 89436
Query 178063 TATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGG 178122
||||||| || || ||||| |||||||||||||| || |||||| | ||||| ||||| |
Sbjct 89437 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTG 89496
Query 178123 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCC 178182
||||||| || || || || |||||||||||| | || |||||| | |
Sbjct 89497 TATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTA 89556
Query 178183 GTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAA 178242
| || || ||||||| ||| || || | ||||||| || || ||||| |||||||
Sbjct 89557 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAA 89616
Query 178243 CATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGT 178302
| ||||| ||||| || || |||| ||| || ||||| ||||||||||||||||| |
Sbjct 89617 CTTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTT 89676
Query 178303 TCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTA 178349
||||||| |||||||| | ||||||||| | || || ||||| |||
Sbjct 89677 TCAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTA 89723
Score = 122 bits (134), Expect = 1e-22
Identities = 136/182 (75%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 178215 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTC 178274
||||||| || || ||||| |||||||| ||||| ||||| || || |||||||| ||
Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793
Query 178275 GGTCGTTTGATCTTC------CAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTC 178328
||||| ||||||||| |||||||| |||||||| || ||||| | ||||||
Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853
Query 178329 TTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATG 178388
||| | || || ||||| ||||| || || ||||| || || | ||| | ||| |||
Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913
Query 178389 GC 178390
||
Sbjct 89914 GC 89915
Score = 89.7 bits (98), Expect = 6e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 177687 ATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 177746
|| || || || |||||||| || | || || || | || || ||||| || || |||
Sbjct 89156 ATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTTCT 89215
Query 177747 GGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCC 177806
||||| || | || |||| || || || | || || ||||| || ||||||||
Sbjct 89216 GGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAGCA 89275
Query 177807 GCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 177843
||||| ||||||||||| | ||||| ||||||||||
Sbjct 89276 GCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312
>seq8938
Length=12132
Score = 158 bits (174), Expect = 1e-33
Identities = 225/316 (71%), Gaps = 2/316 (1%)
Strand=Plus/Minus
Query 179638 ACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTC 179697
|| || |||||||||||||| || | || |||||| | ||| |||||| |||||||
Sbjct 2038 ACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGTTA 1979
Query 179698 CACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATT 179757
|| ||||||| | | ||||| || || | | | | ||| | | || |||| | |
Sbjct 1978 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAGTC 1919
Query 179758 GGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCA--GAGCAGCAG 179815
|| || || | || || ||||| ||||| || || ||||| || | ||||| |
Sbjct 1918 GGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGCCG 1859
Query 179816 AAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTG 179875
|||||||||| || ||||| ||||| || || || ||||| | |||||||| | ||||
Sbjct 1858 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTG 1799
Query 179876 CTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTAC 179935
||||| ||| || ||||| || ||||||||| | || ||||| || || || ||||
Sbjct 1798 CTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 1739
Query 179936 CTAGTGGTAACGCACT 179951
| |||| ||||| ||
Sbjct 1738 CCCGTGGAAACGCTCT 1723
>seq10333
Length=16991
Score = 132 bits (146), Expect = 6e-26
Identities = 172/238 (72%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 179499 TGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATAC 179558
||| ||| | |||| | |||||||| | ||||||||||| | || ||||| |||||
Sbjct 6646 TGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATAC 6705
Query 179559 ATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGA 179618
|| | || ||||| || ||||| ||||| || || || | || |||| ||
Sbjct 6706 TTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGA 6765
Query 179619 GGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTT 179678
|| || ||||| ||||| || || |||||||||||||| || || || |||||| | ||
Sbjct 6766 AGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTT 6825
Query 179679 TAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGG 179736
| |||||| |||||||| || ||||||| | | ||||| || || | ||| | |||
Sbjct 6826 TTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACAGGTTTATGG 6883
>seq15824
Length=139560
Score = 120 bits (132), Expect = 4e-22
Identities = 138/186 (74%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 179311 CGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTC 179370
|| ||||| ||||| || || || | || || ||||| || || ||| |||||| ||
Sbjct 61301 CGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTA 61242
Query 179371 ATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATC 179430
|| || ||||| | ||||| |||||||||||||||| |||||||| || || ||
Sbjct 61241 ATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATT 61182
Query 179431 TTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATG 179490
||| ||||| | || || || ||||| || || || ||||| | ||| | ||||| |||
Sbjct 61181 TTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACGCAGAACTCTTTTCATATG 61122
Query 179491 ATGGGA 179496
||||||
Sbjct 61121 ATGGGA 61116
>seq12877
Length=40778
Score = 120 bits (132), Expect = 4e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 179773 CTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAG 179832
||| |||| ||||| || || ||||| || | ||||| ||||||||||| || |||
Sbjct 746 CTTAGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAG 805
Query 179833 ACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCT 179892
|| ||||| || || || ||||| | |||||||| | ||||||||| |||| ||
Sbjct 806 ACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAA 865
Query 179893 GATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951
||||| || ||||||||| | || ||||| || || || ||||| |||| ||||| ||
Sbjct 866 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 924
>seq12771
Length=31889
Score = 104 bits (114), Expect = 3e-17
Identities = 177/254 (70%), Gaps = 6/254 (2%)
Strand=Plus/Minus
Query 179248 GGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGG 179306
||| | |||| ||||| || || ||| | || || || ||||| || || ||| ||
Sbjct 8621 GGTACTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAA 8562
Query 179307 TATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATT 179366
| | || ||||| ||||| || || || | || | |||| || || ||| ||||||
Sbjct 8561 T-TGCGCCCTTATAATGCAATAGCATTCTCGGGCCAAATTGTTGTTTTTGTTTCTGTATT 8503
Query 179367 TCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGG----TGTTG 179422
|| || || ||||| | ||||| |||||||||||||||| ||||| ||| |
Sbjct 8502 CCTAATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTATGTAG 8443
Query 179423 CGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCT 179482
| | || ||| ||| | | || || || | ||| || || || ||||| | ||||| |
Sbjct 8442 CAACTATTTTTCGATCCATCCTCTTTTTTCGAGGGTTTCATAATTGGACGTTGAACCCTT 8383
Query 179483 TTCACATGATGGGA 179496
|||| |||||||||
Sbjct 8382 TTCATATGATGGGA 8369
>seq14024
Length=49420
Score = 95.1 bits (104), Expect = 1e-14
Identities = 239/357 (67%), Gaps = 11/357 (3%)
Strand=Plus/Plus
Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008
||||||||||| | | | |||| || || ||||| |||| ||| || || | ||
Sbjct 34647 TGGATGACTGGTTACGTAGAGATCATTTCGTTTTTGTAGGTTAGTCGGGTCTATTGCTCT 34706
Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACT-----GGGACAGCTTTTGTTAC 179063
|||| ||||||| |||| | || |||||| ||| | || || | ||||| ||
Sbjct 34707 TTCCTTGTGCTTATTTTGCTGTAGGGGGTTGGTTTAATTTACAGGTACGACGTTTGTAAC 34766
Query 179064 GAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CG 179121
||||| || ||||| | || ||||| ||| | ||||| ||| | ||||||| |
Sbjct 34767 TTCATGGTATACTCATGGGATGGCCAGTTCATATTTGGAAGGCTGCAA--TTTCTTAACC 34824
Query 179122 GCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TGGGGTCC 179180
||| | || || |||||| || | | | || ||| || || | || ||||||||
Sbjct 34825 GCAATCGATTCTACTCCTGCTAATAGTTTAGCACACTCT-TTGTTGTTGTTGTGGGGTCC 34883
Query 179181 TGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGC 179240
||| | || || |||| || ||| | ||| | || || | |||| ||| || ||
Sbjct 34884 TGAAGCACAAGGCGATTTTACTCGTTGGCGTCAATTAGGCGGCCAGTGGACTTTTGTTGC 34943
Query 179241 TCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG 179297
||| || ||||| |||| ||||| || | ||| | || || || |||| || ||
Sbjct 34944 TCTTCATGGTGCTTTCGGACTAATAGGTCTTATGTTACGCCAATTCAAACTTGCTCG 35000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605325845966080
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