Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq11475 508 7e-139 seq15224 277 2e-69 seq8938 158 1e-33 seq10333 132 6e-26 seq15824 120 4e-22 seq12877 120 4e-22 seq12771 104 3e-17 seq14024 95.1 1e-14 >seq11475 Length=22225 Score = 508 bits (562), Expect = 7e-139 Identities = 720/1006 (72%), Gaps = 6/1006 (1%) Strand=Plus/Minus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | | | || || || || ||||| ||||||||||| || | || Sbjct 12873 TGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 12814 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||||||| | || | || |||||| |||| || || | ||||| || | Sbjct 12813 TTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTTTGTAACTTCAT 12754 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGC 179126 |||| || ||||| | || ||||| ||| | ||||| ||| | ||||||| | ||||| Sbjct 12753 GGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGCAA--TTTCTTAACCGCAGC 12696 Query 179127 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 179186 || || || |||||| || | | | || ||| | | | || ||||||||||| | Sbjct 12695 CGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGGGTCCTGAAGC 12636 Query 179187 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCA 179246 || || |||| || ||||| ||| | || || || |||| ||| || ||||| || Sbjct 12635 ACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCA 12576 Query 179247 CGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCG 179305 ||||| |||| ||||| || || ||| | || || || ||||| || || ||| || Sbjct 12575 TGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCA 12516 Query 179306 GTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTAT 179365 | | || ||||| ||||| || || || | || || ||||| || || ||| ||||| Sbjct 12515 AT-TGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTAT 12457 Query 179366 TTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGG 179425 | || || || ||||| || ||||| |||||||||||||||| |||||||| || | Sbjct 12456 TCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAG 12397 Query 179426 CGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTC 179485 | || ||| ||||| | || || || ||||| || || || ||||| || ||||| |||| Sbjct 12396 CTATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGAACCCTTTTC 12337 Query 179486 ACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAA 179545 | |||||||||||||| ||| | |||| | |||||||| | ||||||||||| | | Sbjct 12336 ATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTA 12277 Query 179546 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACT 179605 | ||||| ||||| || | || ||||| || ||||| ||||| || || || Sbjct 12276 CCGTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACC 12217 Query 179606 CTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCT 179665 | || |||| || || || ||||| ||||| || || |||||||||||||| || || | Sbjct 12216 CAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTT 12157 Query 179666 TCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCA 179725 | |||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || | Sbjct 12156 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 12097 Query 179726 TGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATG 179785 ||| | ||| | | || |||| | | || || || | || || ||||| |||| Sbjct 12096 CCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATG 12037 Query 179786 ATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAA 179845 | || || ||||| || | ||||| ||||||||||| || ||||| ||||| || | Sbjct 12036 ACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCA 11977 Query 179846 AGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATG 179905 | || ||||| | |||||||| | ||||||||| |||| || ||||| || |||| Sbjct 11976 AAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 11917 Query 179906 AAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||||| | || ||||| || || || ||||| |||| ||||| || Sbjct 11916 AAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 11871 >seq15224 Length=172684 Score = 277 bits (306), Expect = 2e-69 Identities = 307/407 (75%), Gaps = 2/407 (0%) Strand=Plus/Plus Query 177944 TGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTC 178002 |||||| || || || |||||||| || | || || ||||| | ||||||| | |||| Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGT-TTTCTTGATCTATCCAATTGGTC 89376 Query 178003 AAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 178062 |||| || || |||| ||||||| | || || ||||||||||| |||| |||| ||| Sbjct 89377 AAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTG 89436 Query 178063 TATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGG 178122 ||||||| || || ||||| |||||||||||||| || |||||| | ||||| ||||| | Sbjct 89437 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTG 89496 Query 178123 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCC 178182 ||||||| || || || || |||||||||||| | || |||||| | | Sbjct 89497 TATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTA 89556 Query 178183 GTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAA 178242 | || || ||||||| ||| || || | ||||||| || || ||||| ||||||| Sbjct 89557 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAA 89616 Query 178243 CATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGT 178302 | ||||| ||||| || || |||| ||| || ||||| ||||||||||||||||| | Sbjct 89617 CTTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTT 89676 Query 178303 TCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTA 178349 ||||||| |||||||| | ||||||||| | || || ||||| ||| Sbjct 89677 TCAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTA 89723 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 178215 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTC 178274 ||||||| || || ||||| |||||||| ||||| ||||| || || |||||||| || Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 178275 GGTCGTTTGATCTTC------CAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTC 178328 ||||| ||||||||| |||||||| |||||||| || ||||| | |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 178329 TTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATG 178388 ||| | || || ||||| ||||| || || ||||| || || | ||| | ||| ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 178389 GC 178390 || Sbjct 89914 GC 89915 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 177687 ATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 177746 || || || || |||||||| || | || || || | || || ||||| || || ||| Sbjct 89156 ATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTTCT 89215 Query 177747 GGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCC 177806 ||||| || | || |||| || || || | || || ||||| || |||||||| Sbjct 89216 GGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAGCA 89275 Query 177807 GCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 177843 ||||| ||||||||||| | ||||| |||||||||| Sbjct 89276 GCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312 >seq8938 Length=12132 Score = 158 bits (174), Expect = 1e-33 Identities = 225/316 (71%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 179638 ACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTC 179697 || || |||||||||||||| || | || |||||| | ||| |||||| ||||||| Sbjct 2038 ACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGTTA 1979 Query 179698 CACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATT 179757 || ||||||| | | ||||| || || | | | | ||| | | || |||| | | Sbjct 1978 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAGTC 1919 Query 179758 GGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCA--GAGCAGCAG 179815 || || || | || || ||||| ||||| || || ||||| || | ||||| | Sbjct 1918 GGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGCCG 1859 Query 179816 AAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTG 179875 |||||||||| || ||||| ||||| || || || ||||| | |||||||| | |||| Sbjct 1858 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTG 1799 Query 179876 CTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTAC 179935 ||||| ||| || ||||| || ||||||||| | || ||||| || || || |||| Sbjct 1798 CTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 1739 Query 179936 CTAGTGGTAACGCACT 179951 | |||| ||||| || Sbjct 1738 CCCGTGGAAACGCTCT 1723 >seq10333 Length=16991 Score = 132 bits (146), Expect = 6e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 179499 TGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATAC 179558 ||| ||| | |||| | |||||||| | ||||||||||| | || ||||| ||||| Sbjct 6646 TGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATAC 6705 Query 179559 ATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGA 179618 || | || ||||| || ||||| ||||| || || || | || |||| || Sbjct 6706 TTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGA 6765 Query 179619 GGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTT 179678 || || ||||| ||||| || || |||||||||||||| || || || |||||| | || Sbjct 6766 AGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTT 6825 Query 179679 TAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGG 179736 | |||||| |||||||| || ||||||| | | ||||| || || | ||| | ||| Sbjct 6826 TTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACAGGTTTATGG 6883 >seq15824 Length=139560 Score = 120 bits (132), Expect = 4e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 179311 CGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTC 179370 || ||||| ||||| || || || | || || ||||| || || ||| |||||| || Sbjct 61301 CGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTA 61242 Query 179371 ATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATC 179430 || || ||||| | ||||| |||||||||||||||| |||||||| || || || Sbjct 61241 ATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATT 61182 Query 179431 TTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATG 179490 ||| ||||| | || || || ||||| || || || ||||| | ||| | ||||| ||| Sbjct 61181 TTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACGCAGAACTCTTTTCATATG 61122 Query 179491 ATGGGA 179496 |||||| Sbjct 61121 ATGGGA 61116 >seq12877 Length=40778 Score = 120 bits (132), Expect = 4e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 179773 CTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAG 179832 ||| |||| ||||| || || ||||| || | ||||| ||||||||||| || ||| Sbjct 746 CTTAGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAG 805 Query 179833 ACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCT 179892 || ||||| || || || ||||| | |||||||| | ||||||||| |||| || Sbjct 806 ACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAA 865 Query 179893 GATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||||| || ||||||||| | || ||||| || || || ||||| |||| ||||| || Sbjct 866 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 924 >seq12771 Length=31889 Score = 104 bits (114), Expect = 3e-17 Identities = 177/254 (70%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 179248 GGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGG 179306 ||| | |||| ||||| || || ||| | || || || ||||| || || ||| || Sbjct 8621 GGTACTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAA 8562 Query 179307 TATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATT 179366 | | || ||||| ||||| || || || | || | |||| || || ||| |||||| Sbjct 8561 T-TGCGCCCTTATAATGCAATAGCATTCTCGGGCCAAATTGTTGTTTTTGTTTCTGTATT 8503 Query 179367 TCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGG----TGTTG 179422 || || || ||||| | ||||| |||||||||||||||| ||||| ||| | Sbjct 8502 CCTAATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTATGTAG 8443 Query 179423 CGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCT 179482 | | || ||| ||| | | || || || | ||| || || || ||||| | ||||| | Sbjct 8442 CAACTATTTTTCGATCCATCCTCTTTTTTCGAGGGTTTCATAATTGGACGTTGAACCCTT 8383 Query 179483 TTCACATGATGGGA 179496 |||| ||||||||| Sbjct 8382 TTCATATGATGGGA 8369 >seq14024 Length=49420 Score = 95.1 bits (104), Expect = 1e-14 Identities = 239/357 (67%), Gaps = 11/357 (3%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | | | |||| || || ||||| |||| ||| || || | || Sbjct 34647 TGGATGACTGGTTACGTAGAGATCATTTCGTTTTTGTAGGTTAGTCGGGTCTATTGCTCT 34706 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACT-----GGGACAGCTTTTGTTAC 179063 |||| ||||||| |||| | || |||||| ||| | || || | ||||| || Sbjct 34707 TTCCTTGTGCTTATTTTGCTGTAGGGGGTTGGTTTAATTTACAGGTACGACGTTTGTAAC 34766 Query 179064 GAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CG 179121 ||||| || ||||| | || ||||| ||| | ||||| ||| | ||||||| | Sbjct 34767 TTCATGGTATACTCATGGGATGGCCAGTTCATATTTGGAAGGCTGCAA--TTTCTTAACC 34824 Query 179122 GCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TGGGGTCC 179180 ||| | || || |||||| || | | | || ||| || || | || |||||||| Sbjct 34825 GCAATCGATTCTACTCCTGCTAATAGTTTAGCACACTCT-TTGTTGTTGTTGTGGGGTCC 34883 Query 179181 TGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGC 179240 ||| | || || |||| || ||| | ||| | || || | |||| ||| || || Sbjct 34884 TGAAGCACAAGGCGATTTTACTCGTTGGCGTCAATTAGGCGGCCAGTGGACTTTTGTTGC 34943 Query 179241 TCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG 179297 ||| || ||||| |||| ||||| || | ||| | || || || |||| || || Sbjct 34944 TCTTCATGGTGCTTTCGGACTAATAGGTCTTATGTTACGCCAATTCAAACTTGCTCG 35000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605325845966080