Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq13853 140 3e-28 seq15779 107 2e-18 seq4575 98.7 1e-15 seq22481 96.9 3e-15 seq15654 96.9 3e-15 seq44981 93.3 4e-14 seq44944 91.5 1e-13 seq13404 89.7 5e-13 >seq13853 Length=43806 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| ||| | ||| || |||| || || || ||||| ||||||||||| | Sbjct 18876 CCACCACGTAGACGAAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCC 18817 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| || |||||||||||| |||||||||||||||| || || || Sbjct 18816 AAAGTACGGCCGTCTTCAAGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGA 18757 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| |||||| ||| | | || | |||||| | | ||| ||| Sbjct 18756 ATTCCTTCCTTGTCTTGGATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACT 18697 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||||||||| | ||||| ||||| |||||||| Sbjct 18696 TCTAGAGTGATTGTCTTGCCGGTTAGGGTTTTCACGAAGATTTGCAT 18650 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| ||| | ||| || |||| || || || ||||| ||||||||||| | Sbjct 9294 CCACCACGTAGACGAAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCC 9235 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| || |||||||||||| |||||||||||||||| || || || Sbjct 9234 AAAGTACGGCCGTCTTCAAGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGA 9175 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| |||||| ||| | | || | |||||| | | ||| ||| Sbjct 9174 ATTCCTTCCTTGTCTTGGATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACT 9115 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||| |||| | ||||| ||||| |||||||| Sbjct 9114 TCTAGAGTGATTGTCTTGTCGGTTAGGGTTTTCACGAAGATTTGCAT 9068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || ||||||||||| || | ||| | || || || ||||| ||||| || ||| | Sbjct 9748 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 9689 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| | || ||||| || || || || | |||| ||| ||||| || || || Sbjct 9688 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 9629 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || ||||| || ||| || | | || | ||||| || || || Sbjct 9628 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 9569 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | ||||| || ||||| || ||||| || || |||||| Sbjct 9568 TCGAGAGTGATGGTCTTCCCCGTCAAGGTCTTTACAAAAATCTGCATA 9521 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || ||||||||||| || | ||| | || || || ||||| ||||| || ||| | Sbjct 19788 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 19729 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| | || ||||| || || || || | |||| ||| ||||| || || || Sbjct 19728 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 19669 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || ||||| || ||| || | | || | ||||| || || || Sbjct 19668 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 19609 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| || ||||| || || ||||| || |||||| Sbjct 19608 TCGAGGGTGATAGTCTTCCCAGTCAAGGTCTTCACGAAAATCTGCATA 19561 >seq15779 Length=145502 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243 || || || ||||| | ||| || |||| || || || || || |||||||| || ||| Sbjct 121926 CCACCACGCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCT 121867 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| |||||| || ||||| |||||| ||||||| | |||||| || || || Sbjct 121866 -AGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGG 121808 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| || ||| || | | || | ||||| | ||| || Sbjct 121807 GATCCCTTCCTTGTCTTGGATCTTTGTCTTGACATTGTCGATAGTGTCGGAACTTTCGAC 121748 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||||||||| || ||||| ||||| |||||||| Sbjct 121747 CTCAAGAGTGATGGTCTTGCCGGTTAAGGTTTTGACGAAGATTTGCAT 121700 >seq4575 Length=13488 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| || || || || || || || |||| | ||| ||||||||||||||| Sbjct 357 GTCGATTCCTTCTGAATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCA 298 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| ||||||| | |||||| || || || |||||||| || || ||||| || Sbjct 297 GCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTG 238 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | || || || | || | |||||||||||||| || Sbjct 237 ACATTGTCAATCGTGTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTC 178 Query 137395 TTTACGAATATTTGCAT 137411 |||||||| |||||||| Sbjct 177 TTTACGAAGATTTGCAT 161 >seq22481 Length=674 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | || || |||| || || || || || |||||||| || Sbjct 370 GCCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCAGC 311 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||| || || |||||||||||| ||||||| | |||||| || || || Sbjct 310 CAAGGTGCGGCCGTCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGG 251 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| || || ||||| || | | || | |||||| | || || Sbjct 250 GATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATCGTGTCGGAACTCTCAAC 191 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||||||||||| || |||||||| |||||||| Sbjct 190 CTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTGCAT 143 >seq15654 Length=163759 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | || || |||| || || || || || |||||||| || Sbjct 111786 GCCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCAGC 111727 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||| || || |||||||||||| ||||||| | |||||| || || || Sbjct 111726 CAAGGTGCGGCCGTCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGG 111667 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| || || ||||| || | | || | |||||| | || || Sbjct 111666 GATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATCGTGTCGGAACTCTCAAC 111607 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||||||||||| || |||||||| |||||||| Sbjct 111606 CTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTGCAT 111559 >seq44981 Length=29031 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 ||| |||||||||||||||||| ||||||| | |||||| || || || |||||||| || Sbjct 10438 GTCCTCGAGTTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTT 10497 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 || ||||| || | | || | |||||| | || || || | || | Sbjct 10498 ATCCTGGATTTTGGTCTTGACATTGTCAATCGTGTCGGAACTCTCAACCTCGAGGGTGAT 10557 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||||||||| || |||||||| |||||||| Sbjct 10558 GGTCTTGCCGGTCAAAGTCTTTACGAAGATTTGCAT 10593 >seq44944 Length=25146 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| || || || || || |||||||| ||| Sbjct 21010 CCACCACGCAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 21069 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || |||||||| || |||||| |||||||||||||||| || || || Sbjct 21070 AGAGTGCGGCCATCCTCGAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGGTCTGGGGGG 21129 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || ||||| ||||| || | | || | ||||| | ||||| Sbjct 21130 ATGCCCTCCTTGTCTTGGATTTTGGTCTTGACGTTGTCGATTGTGTCAGAACTCTCTACC 21189 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | |||||||||||||| || || ||||| || |||||| Sbjct 21190 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATA 21237 >seq13404 Length=35904 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| || || || || || || || |||| | || |||||||||||||| Sbjct 6086 GTCGATTCCTTCTGAATATTATAGTCTGCCAACGTGCGCCCATCCTCGAGTTGTTTACCC 6027 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| ||||||| | |||||| || || || |||||||| || || ||||| || Sbjct 6026 GCAAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTG 5967 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | || || || | || | |||||||||||||| || Sbjct 5966 ACATTGTCAATCGTGTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTC 5907 Query 137395 TTTACGAATATTTGCAT 137411 |||||||| |||||||| Sbjct 5906 TTTACGAAGATTTGCAT 5890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488268656601600