Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq16339 93.3 1e-13 seq16048 93.3 1e-13 seq15946 93.3 1e-13 seq11586 93.3 1e-13 >seq16339 Length=633413 Score = 93.3 bits (102), Expect = 1e-13 Identities = 130/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 305313 TGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGA 305372 |||||||| || | || || ||||| |||| || || |||||||||||||| | Sbjct 249793 TGAATGACGGGGACTTTGTGCTTTTCAACCGGCAGCCTAGTCTCCATAAAATGTCTATTA 249734 Query 305373 TGGCTCATAAAGTCAAAGTATTAT-CTGGATT-GACATTTCGATTAAATGTAAGTGCTTG 305430 ||| |||| | | |||| ||||| | ||| ||||||||| ||||| | || Sbjct 249733 TGGGGCATAGAAT-AAAG-ATTATGCCCTATTCGACATTTCGTCTAAATTTGTCTGTCAC 249676 Query 305431 TACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | | || || ||||| ||||||||||| ||||||||||| |||||||| || ||||| Sbjct 249675 TTCTCCATACAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTCCCCCAATC 249619 >seq16048 Length=246288 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||||| | || ||||| || || ||||| | |||||| |||| ||| | | Sbjct 204294 TTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATT---GATGGTTCTGAGA 204350 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || || || | |||||||| ||||| || || ||||||||||| || || Sbjct 204351 CGTTTGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTT 204410 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 |||| || || ||||||||||| ||||||||| | ||||| || | | || || ||| Sbjct 204411 TCTGCGCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATG 204470 Query 131967 AATTCATCTC 131976 || |||| || Sbjct 204471 AACTCATTTC 204480 >seq15946 Length=172941 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||||| | || ||||| || || ||||| | |||||| |||| ||| | | Sbjct 58359 TTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATT---GATGGTTCTGAGA 58415 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || || || | |||||||| ||||| || || ||||||||||| || || Sbjct 58416 CGTTTGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTT 58475 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 |||| || || ||||||||||| ||||||||| | ||||| || | | || || ||| Sbjct 58476 TCTGCGCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATG 58535 Query 131967 AATTCATCTC 131976 || |||| || Sbjct 58536 AACTCATTTC 58545 >seq11586 Length=26096 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||||| | || ||||| || || ||||| | |||||| |||| ||| | | Sbjct 4117 TTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATT---GATGGTTCTGAGA 4173 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || || || | |||||||| ||||| || || ||||||||||| || || Sbjct 4174 CGTTTGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTT 4233 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 |||| || || ||||||||||| ||||||||| | ||||| || | | || || ||| Sbjct 4234 TCTGCGCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATG 4293 Query 131967 AATTCATCTC 131976 || |||| || Sbjct 4294 AACTCATTTC 4303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186127190113568