Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq16339 93.3 1e-13
seq16048 93.3 1e-13
seq15946 93.3 1e-13
seq11586 93.3 1e-13
>seq16339
Length=633413
Score = 93.3 bits (102), Expect = 1e-13
Identities = 130/177 (73%), Gaps = 4/177 (2%)
Strand=Plus/Minus
Query 305313 TGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGA 305372
|||||||| || | || || ||||| |||| || || |||||||||||||| |
Sbjct 249793 TGAATGACGGGGACTTTGTGCTTTTCAACCGGCAGCCTAGTCTCCATAAAATGTCTATTA 249734
Query 305373 TGGCTCATAAAGTCAAAGTATTAT-CTGGATT-GACATTTCGATTAAATGTAAGTGCTTG 305430
||| |||| | | |||| ||||| | ||| ||||||||| ||||| | ||
Sbjct 249733 TGGGGCATAGAAT-AAAG-ATTATGCCCTATTCGACATTTCGTCTAAATTTGTCTGTCAC 249676
Query 305431 TACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487
| | || || ||||| ||||||||||| ||||||||||| |||||||| || |||||
Sbjct 249675 TTCTCCATACAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTCCCCCAATC 249619
>seq16048
Length=246288
Score = 93.3 bits (102), Expect = 1e-13
Identities = 135/190 (71%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846
||||||| | || ||||| || || ||||| | |||||| |||| ||| | |
Sbjct 204294 TTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATT---GATGGTTCTGAGA 204350
Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906
||| || || || | |||||||| ||||| || || ||||||||||| || ||
Sbjct 204351 CGTTTGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTT 204410
Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966
|||| || || ||||||||||| ||||||||| | ||||| || | | || || |||
Sbjct 204411 TCTGCGCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATG 204470
Query 131967 AATTCATCTC 131976
|| |||| ||
Sbjct 204471 AACTCATTTC 204480
>seq15946
Length=172941
Score = 93.3 bits (102), Expect = 1e-13
Identities = 135/190 (71%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846
||||||| | || ||||| || || ||||| | |||||| |||| ||| | |
Sbjct 58359 TTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATT---GATGGTTCTGAGA 58415
Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906
||| || || || | |||||||| ||||| || || ||||||||||| || ||
Sbjct 58416 CGTTTGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTT 58475
Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966
|||| || || ||||||||||| ||||||||| | ||||| || | | || || |||
Sbjct 58476 TCTGCGCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATG 58535
Query 131967 AATTCATCTC 131976
|| |||| ||
Sbjct 58536 AACTCATTTC 58545
>seq11586
Length=26096
Score = 93.3 bits (102), Expect = 1e-13
Identities = 135/190 (71%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846
||||||| | || ||||| || || ||||| | |||||| |||| ||| | |
Sbjct 4117 TTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATT---GATGGTTCTGAGA 4173
Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906
||| || || || | |||||||| ||||| || || ||||||||||| || ||
Sbjct 4174 CGTTTGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTT 4233
Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966
|||| || || ||||||||||| ||||||||| | ||||| || | | || || |||
Sbjct 4234 TCTGCGCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATG 4293
Query 131967 AATTCATCTC 131976
|| |||| ||
Sbjct 4294 AACTCATTTC 4303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186127190113568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |