Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq14479 118 3e-21 seq44944 114 3e-20 seq37662 114 3e-20 seq16149 105 2e-17 seq15779 105 2e-17 seq15394 104 6e-17 seq16084 98.7 2e-15 seq13717 91.5 3e-13 >seq14479 Length=56811 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || |||||| | || || || || |||||| Sbjct 51137 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCTGAC 51078 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||| | ||| || || || || || || ||| || ||| || Sbjct 51077 ACTATTGACAACGTCAAAACCAAA-ATCCAGGATAAGGAGGGTATTCCCCCAGACCAGCA 51019 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| |||||||| || ||||||||| | || ||||| | ||||||||||| |||||| | Sbjct 51018 AAGGCTTATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGTACTTTGGCCGACTACAACAT 50959 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| |||||||| ||||||||||| Sbjct 50958 CCAGAAGGAGTCTACCCTTCACCTTGT 50932 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||| | || || || |||||||| |||||||||| || ||| Sbjct 50681 CAGATCTTTGTGAAGACGTTGACCGGCAAGACGATCACCCTGGAAGTGGAGAGCAGCGAC 50622 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || |||||| || Sbjct 50621 ACGATCGACAATGTGAAGACTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 50562 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || ||||||||||| || || | || |||||||| ||||| || Sbjct 50561 AGGCTGATCTTTGCTGGGAAGCAGTTGGAGGACGGTCGCACCTTGGCCGACTACAATATC 50502 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || |||||||| Sbjct 50501 CAGAAGGAGTCAACCCTCCACCTTGT 50476 Score = 98.7 bits (108), Expect = 2e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| |||||||| ||||||| || ||||| |||||||| | ||||| || Sbjct 50932 ACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCA 50991 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| || |||||||||| ||| || Sbjct 50992 AGCTGCTTTCCCGCAAAGATAAGCCTTTGCTG 51023 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| | || || || ||||||||| Sbjct 51365 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGTTCTGAC 51306 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| || || ||||| || || || || || ||| ||| Sbjct 51305 ACAATCGACAACGTCAAGACCAAAATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAA 51246 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || |||||||| | || ||||| | ||| | ||||| |||||| || Sbjct 51245 CGTCTGATCTTTGCTGGAAAGCAACTCGAGGATGGCCGCACTCTTGCCGACTACAACATC 51186 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || |||||| Sbjct 51185 CAGAAGGAGTCCACCCTTCAC 51165 >seq44944 Length=25146 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || |||||| | || || || || |||||| Sbjct 21005 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTTGAGAGCTCTGAC 20946 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || ||||| || || || || || ||| || ||| ||| Sbjct 20945 ACTATTGACAACGTCAAAACCAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAGCAA 20886 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || |||||||| || ||||||||| | || ||||| | |||||||| || |||||| || Sbjct 20885 AGGCTTATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGGCTGACTACAACATC 20826 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| ||||||||||| Sbjct 20825 CAGAAGGAGTCTACCCTTCACCTTGT 20800 Score = 104 bits (114), Expect = 6e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| |||||||| ||||||| || |||||||||||||| | ||||| || Sbjct 20800 ACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGACCATCCTCA 20859 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| || |||||||||| ||| || Sbjct 20860 AGCTGCTTTCCAGCAAAGATAAGCCTTTGCTG 20891 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||| | || || || |||||||| |||||||||| || ||| Sbjct 20549 CAGATCTTTGTGAAGACGTTGACCGGCAAGACGATCACCCTGGAAGTGGAGAGCAGCGAC 20490 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || |||||| || Sbjct 20489 ACGATCGACAATGTGAAGACTAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGCAG 20430 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || || || || || ||||||||||| || || | || |||||||| ||||| || Sbjct 20429 AGGCTGATTTTTGCGGGGAAGCAGTTGGAGGACGGTCGCACCTTGGCCGACTACAATATC 20370 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || |||||||| Sbjct 20369 CAGAAGGAGTCGACCCTCCACCTTGT 20344 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| | || || || ||||||||| Sbjct 21233 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTAGAGAGTTCTGAC 21174 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| || || ||||| || || || || || ||| ||| Sbjct 21173 ACAATCGACAACGTCAAGACCAAAATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAA 21114 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || |||||||| | || ||||| | ||| | ||||| |||||| || Sbjct 21113 CGTCTGATCTTTGCTGGAAAGCAACTCGAGGATGGCCGCACTCTTGCCGACTACAACATC 21054 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || |||||| Sbjct 21053 CAGAAGGAGTCCACCCTTCAC 21033 >seq37662 Length=1545 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||| ||||| || |||||||| |||||||| |||||||| ||||| | || Sbjct 239 AAAACGCTGACAGGGAAGACGATCACCTTGGAAGTTGAAAGTTCGGACACCATTGACAAC 180 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||| ||||||| || || || || || || || || | || ||| Sbjct 179 GTTAAGTCCAAGGTTCAAGATAAGGAGGGGATCCCTCCTGATCAGCAGAGGTTGATTTTC 120 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| ||| | || || || | || | || ||||||||| |||||||||||||| Sbjct 119 GCGGGAAAACAGCTTGAGGACGGTCGTACGCTTGCTGATTACAACATCCAGAAAGAGTCT 60 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 || || ||| | || ||| |||| Sbjct 59 ACGCTCCACTTGGTGTTGCGACT 37 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | ||| || | ||||| || ||||| ||||| || |||||||||||||| || Sbjct 262 CGAAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAACGTTATAGTCAGCCAATGTA 321 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||| || ||||| ||||| || ||||| || ||||| ||| Sbjct 322 CGACCATCCTCGAGCTGTTTTCCTGCAAAGATTAGACGTTGCTGA 366 >seq16149 Length=224952 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| ||||| || || || || ||||| || ||||| || ||| || ||| Sbjct 103466 CAGATATTCGTGAAAACCCTAACGGGGAAGACGATAACATTGGAGGTTGAATCCTCCGAC 103525 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || |||||||| || ||||| || || ||| ||| Sbjct 103526 ACCATCGACAATGTGAAGACCAAAATTCAAGACAAGGAAGGCATCCCTCCCGACCAACAA 103585 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||||||||| ||| | ||||| || | || | ||||| |||||| || Sbjct 103586 CGTCTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGTACACTCGCCGACTACAACATC 103645 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || || |||||||| Sbjct 103646 CAGAAGGAATCAACCCTCCACCTTGT 103671 >seq15779 Length=145502 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || |||||| | ||||| || || ||| Sbjct 122615 CAGATCTTTGTCAAGACCTTGACTGGGAAGACTATCACTCTTGAAGTCGAGAGCAGCGAC 122674 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || ||||||| || Sbjct 122675 ACGATCGACAATGTGAAGACGAAGATCCAGGATAAGGAGGGTATCCCGCCGGACCAGCAG 122734 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || |||||||||||||| ||||| | || ||||| |||||||| | Sbjct 122735 AGGCTCATCTTTGCGGGAAAGCAGTTGGAGGATGGGCGTACGTTGGCTGATTACAATATT 122794 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || ||||||||||| Sbjct 122795 CAGAAGGAATCCACCCTTCACCTTGT 122820 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || ||| | || || |||||||| || | || || || ||||||||| Sbjct 122159 CAGATATTCGTGAAGACGTTAACTGGCAAAACGATTACCCTTGAGGTTGAGAGTTCTGAC 122218 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || || || || || ||| || Sbjct 122219 ACCATCGACAATGTCAAGACTAAGATCCAAGATAAGGAGGGGATCCCACCTGACCAGCAG 122278 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| | || || || | || |||||||| || ||| | Sbjct 122279 AGGCTGATCTTTGCTGGTAAGCAGCTTGAGGACGGGCGTACCTTGGCCGACTATAACATT 122338 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||||||||| Sbjct 122339 CAGAAGGAGTCGACTCTTCAC 122359 >seq15394 Length=94532 Score = 104 bits (114), Expect = 6e-17 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA--AT 206242 ||||| || || || ||||| || || | ||||| ||| || |||||| |||| || Sbjct 44183 AAAACCCTAACTGGGAAAACAATAACCCTAGAAGTCGAATCATCGGACACAATCGACAAT 44242 Query 206243 CAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 | ||| | || ||||||||| || || || ||| |||| ||||| || |||| Sbjct 44243 TTG-AAATCGAA-GATTCAAGAGAAGGAGGGGATTCCAGCGGATCAACAAAGGCTAATCT 44300 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| ||||| ||| | |||||||| | || |||| || |||||| ||||||| || | Sbjct 44301 TCGCTGGAAAACAGCTCGAAGATGGCCGAACAATGGCGGACTACAACATCCAGAAGGAAT 44360 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCG 206390 | || |||||| | ||||| |||| || Sbjct 44361 CGACGCTTCACTTGGTTTTACGACTCCG 44388 >seq16084 Length=201933 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | ||||| || |||||||| | || || || | |||||||| |||| Sbjct 401 AAAACGTTGACAGGGAAGACGATCACCCTAGAGGTCGAGAACTCTGACACGATCGACAAC 460 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||| ||| || | || || ||| Sbjct 461 GTCAAGTCTAAGATCCAGGATAAGGAGGGGATCCCGCCAGACCAACAGCGGCTGATTTTC 520 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| ||| | || ||||| | || | || ||||||||| ||||||| ||||| Sbjct 521 GCAGGAAAACAGCTCGAGGATGGTCGTACGCTTGCTGATTACAACATCCAGAAGGAGTCG 580 Query 206365 ACTCTTCACCTTGT 206378 ||||||||||| || Sbjct 581 ACTCTTCACCTCGT 594 >seq13717 Length=68558 Score = 91.5 bits (100), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA--AT 206242 ||||| || ||||| || ||||| || | || || ||| || ||||| |||| || Sbjct 35219 AAAACCCTAACAGGGAAGACGATAACCCTAGAGGTTGAATCCTCAGACACCATCGACAAT 35160 Query 206243 CAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 | ||| ||| ||| ||||| || ||||| ||| || ||| ||| | || || | Sbjct 35159 GTGAAAACCAA--GATCCAAGACAAGGAAGGCATTCCACCAGACCAACAACGTCTCATTT 35102 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||||||||| ||| | ||||| || | || | || || |||||| ||||||| |||| Sbjct 35101 TCGCCGGAAAACAGCTTGAAGACGGCCGTACACTCGCTGACTACAACATCCAGAAGGAGT 35042 Query 206363 CTACTCTTCAC 206373 | || |||||| Sbjct 35041 CAACACTTCAC 35031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181138073942048