Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq15224 324 4e-84 >seq15224 Length=172684 Score = 324 bits (358), Expect = 4e-84 Identities = 319/407 (78%), Gaps = 4/407 (1%) Strand=Plus/Plus Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || |||||||||||||| || |||| || ||||| | |||| || |||||| Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGT-TTTCTTGATCTATCCAATTGGTC 89376 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 | || ||||| || |||| ||||||||| || || || ||||| ||||||| |||| | | Sbjct 89377 AAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTG 89436 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTG 20069 ||||||| || || || ||||| || |||||||| || |||||| | ||||| ||||||| Sbjct 89437 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTG 89496 Query 20070 TATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TG 20128 ||||||| || || ||||| ||||| ||||| ||||| |||| || | || | ||| | Sbjct 89497 TATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATT 89555 Query 20129 CGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAG 20188 | || || || ||| | ||| | || | ||||||| ||||| ||||| ||||| Sbjct 89556 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAA 89615 Query 20189 ACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCT 20248 || ||||| |||||||| ||||||| ||| ||||| || |||||||||||||| ||| | Sbjct 89616 ACTTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGT 89675 Query 20249 TTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGT 20295 ||||||||| ||||||| ||||||||||| | ||||| |||||||| Sbjct 89676 TTCAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722 Score = 150 bits (166), Expect = 5e-32 Identities = 143/183 (78%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| ||||| ||||| ||||| || ||||| |||||||| ||||||||||| ||| Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 20222 GGACGTTTGATCTTC------CAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTC 20275 || || ||||||||| ||||| ||| |||||||||| |||||| |||||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 20276 TTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATG 20335 ||| | ||||| |||||||| || || |||||||| |||| || || || || ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 20336 GCG 20338 ||| Sbjct 89914 GCG 89916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148749114083904