Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq15224 295 2e-75 >seq15224 Length=172684 Score = 295 bits (326), Expect = 2e-75 Identities = 310/405 (77%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 29020 GCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAA 29079 ||||| |||||||| || |||||||| |||| |||||| | |||| ||| | |||||| Sbjct 89319 GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCAA 89378 Query 29080 GGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTG 29139 || ||| || | |||||||| || ||||| || || ||||||| |||| | || Sbjct 89379 GGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGTA 89438 Query 29140 TTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTG 29199 ||||| || || || ||||| || |||||||| || |||||| |||| || ||||| || Sbjct 89439 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTA 89498 Query 29200 TTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCG 29258 ||||| ||||| ||||||||||| ||||| ||||| |||| | | || | ||| | | Sbjct 89499 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATTAG 89557 Query 29259 TGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGAC 29318 || || || ||| | ||| || | ||||||| ||||| ||||| ||||| || Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617 Query 29319 TTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTT 29378 |||||| |||||||| ||||| | ||| ||||| || |||||||||||||||||| ||| Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677 Query 29379 CAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGT 29423 ||| ||| ||||||| ||||||||||| | ||||| |||||||| Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722 Score = 150 bits (166), Expect = 5e-32 Identities = 143/183 (78%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| ||||| ||||| ||||| |||||||| |||||||| ||||| ||||| ||| Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 29350 GGACGTTTGATCTTC------CAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTC 29403 || || ||||||||| ||||||||| |||||| ||| |||||| |||||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 29404 TTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATG 29463 ||| | ||||| |||||||| || || |||||||| |||| || || || || ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 29464 GCG 29466 ||| Sbjct 89914 GCG 89916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146587072304448