Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq15224 315 2e-81 >seq15224 Length=172684 Score = 315 bits (348), Expect = 2e-81 Identities = 315/406 (78%), Gaps = 2/406 (0%) Strand=Plus/Plus Query 19110 TGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCA 19169 ||| || |||||||| ||||| || || |||| || ||| | |||||||| ||||||| Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377 Query 19170 AGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGT 19229 ||| |||| || | ||||||||| || ||| |||||| ||||||| |||| |||| Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437 Query 19230 ATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGT 19289 |||||||||||| || |||||||| |||||||| || |||||| | ||||| |||||||| Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497 Query 19290 GTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGC 19348 |||||||| || ||||||||||| ||||| ||||| |||| || | || | ||| | Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATTA 89556 Query 19349 GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGA 19408 | ||||| || ||| | | |||| || | || |||| ||||| ||||| ||||| | Sbjct 89557 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAA 89616 Query 19409 CTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCT 19468 ||||||| || || |||||||||| ||||||||||| | || ||||| || || | Sbjct 89617 CTTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTT 89676 Query 19469 TCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGT 19514 |||||||| ||||||| |||| ||||| || ||||||||||| || Sbjct 89677 TCAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722 Score = 122 bits (134), Expect = 2e-23 Identities = 136/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 || |||| ||||| ||||| ||||| |||||||| || || ||||||||||| |||||| Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 19441 GGTCGGCTTATTTTC------CAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTC 19494 ||||| | || ||| || || || ||||||||| |||||| |||| ||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 19495 TTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATG 19554 || || ||||||||||| || || || ||||||||| | || | || | ||||| ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 19555 GC 19556 || Sbjct 89914 GC 89915 Score = 95.1 bits (104), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 15/217 (7%) Strand=Plus/Plus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACAC- 18781 ||| ||| ||||| |||| || || || ||||| ||||| ||||| ||||||||| Sbjct 88920 TTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATCGGATGGTTTGGAGATGG 88979 Query 18782 ----------TGATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCT 18829 |||||||||| | | ||| | || ||| | ||| || ||||| |||| Sbjct 88980 TTTGGTGTTTTGATGATTCC-TACATTATTGACTGCAACT-TCTGTATTTATTATAGCCT 89037 Query 18830 TCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTC 18889 |||||||||| || || || | |||||||| || || || |||||| | || ||| | Sbjct 89038 TCATTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTAC 89097 Query 18890 TTTATGGAAACAACATCATATCGGGAGCCGTCGTTCC 18926 |||| |||||||| || || || || ||| | |||| Sbjct 89098 TTTACGGAAACAATATTATTTCTGGTGCCATTATTCC 89134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141073226109504