Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq15394 93.3 4e-14 seq15600 91.5 1e-13 seq15654 89.7 5e-13 seq37662 87.8 2e-12 seq16149 87.8 2e-12 seq16084 87.8 2e-12 seq14446 87.8 2e-12 seq13853 87.8 2e-12 seq15753 86.0 6e-12 seq12168 86.0 6e-12 >seq15394 Length=94532 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || |||||||| || | | || || || || ||||||||||| ||| || || | Sbjct 44382 CGTAAAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCCGCCATTGTTCGGCCA 44323 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||||||||| || | ||||||| | |||||||| | || || || || || Sbjct 44322 TCTTCGAGCTGTTTTCCAGCGAAGATTAGCCTTTGTTGATCCGCTGGAATCCCCTCCTTC 44263 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||||| | || | || || | | || ||||| | || | Sbjct 44262 TCTTGAATCTTCGATTTCAAATTGTCGATTGTGTCCGATGATTCGACTTCTAGGGTTATT 44203 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTAGATT 132136 ||||| ||||| || ||||| | ||| |||||||||| | ||| |||| Sbjct 44202 GTTTTCCCAGTTAGGGTTTTCACGAAGATCTGCATGATTGATT-GATT 44156 >seq15600 Length=115454 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | ||||| || |||| ||||||||| || ||||| | Sbjct 103265 CGCAAGACCAAATGAAGGGTGGACTCCTTCTGAACGTTGTAGTCAGCCAATGTACGACCA 103206 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || ||||||||||| || | | |||||||||| || ||||||| || || ||||| || Sbjct 103205 TCCTCGAGCTGTTTTCCTGCAAAGATTAGACGTTGCTGATCTGTGGGGATCCCTTCCTTC 103146 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | || | || |||| ||| || |||| |||| Sbjct 103145 TCTTGGATCTTCGTCTTGACATTGTCGATTGTGTCGGAGCTCTCGACATCGAGAGTCATG 103086 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA-CTTATTA 132132 || || ||||| || ||||| | || || ||||| | || |||| Sbjct 103085 GTCTTGCCAGTTAGGGTTTTGACAAAGATTTGCATCATCTGATTA 103041 >seq15654 Length=163759 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || || || |||||||||||||| || ||||| ||| ||| Sbjct 112223 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAAGTACGACCATCCTCG 112164 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| || | | |||| || | ||| || || || || ||||| || ||||| | Sbjct 112163 AGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGA 112104 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | |||||| | ||| || |||| || | || || Sbjct 112103 ATCTTAGTCTTTACATTATCGATGGTATCGCTGCTCTCGACCTCGAGGGTGATGGTCTTT 112044 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| ||| |||| |||||||||||| Sbjct 112043 CCCGTCAAAGTCTTTACGAAAATCTGCAT 112015 >seq37662 Length=1545 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | ||||| || |||| ||| ||||| || ||||| | Sbjct 268 CGCAAGACCAAATGAAGGGTGGACTCCTTCTGAACGTTATAGTCAGCCAATGTACGACCA 327 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || ||||||||||| || | | |||||||||| || ||||||| || || ||||| || Sbjct 328 TCCTCGAGCTGTTTTCCTGCAAAGATTAGACGTTGCTGATCTGTGGGGATCCCTTCCTTC 387 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | || | || |||| ||| || |||| |||| Sbjct 388 TCTTGGATCTTCGTCTTGACATTGTCGATTGTGTCGGAGCTCTCGACATCGAGAGTCATG 447 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA-CTTATTA 132132 || || ||||| || ||||| | || || ||||| | || |||| Sbjct 448 GTCTTGCCAGTTAGGGTTTTGACAAAGATTTGCATCATCTGATTA 492 >seq16149 Length=224952 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || || || |||||||||||| | ||||| ||||| |||||||| |||| Sbjct 103658 TTGATTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCGTCTTCAAGCTGTTTTCCGG 103599 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| ||||| ||||| || ||||| |||||||| || || |||||| |||| Sbjct 103598 CGAAGATGAGACGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGAATTTTGGTCTTCA 103539 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || |||| | || || || | || | ||| || || || || |||| Sbjct 103538 CATTGTCGATGGTGTCGGAGGATTCAACCTCCAATGTTATCGTCTTCCCCGTTAGGGTTT 103479 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| |||||||| Sbjct 103478 TCACGAATATCTGCAT 103463 >seq16084 Length=201933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 |||||| ||||| || | |||| || |||||||||||||||||| | || || Sbjct 373 GCGCAACACCAAGTGAAGCGTTGATTCCTTTTGAATGTTGTAGTCGGCTAGTGTTCGTCC 314 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||||||||||||||| || | | | ||||| || ||||| ||||| || || || || || Sbjct 313 ATCTTCGAGCTGTTTTCCCGCAAAAATTAGCCGTTGTTGGTCTGGTGGAATCCCCTCCTT 254 Query 132028 ATC 132030 ||| Sbjct 253 ATC 251 >seq14446 Length=62709 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | || || || |||||||||||||| || ||||| ||| || Sbjct 47833 AACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAAGTACGGCCATCCTC 47892 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||| | || | |||| || | ||| || || || || |||||||| ||||| Sbjct 47893 GAGCTGTTTCCAGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTATCTTG 47952 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | || | || ||| | ||| || |||| || | ||||| Sbjct 47953 GATCTTAGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTAATGGTTTT 48012 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| | ||| || | ||||||||||||| Sbjct 48013 CCCAGTTAAAGTCTTCACGAAAATCTGCATG 48043 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || || || || ||||||||||| | ||| || || ||| Sbjct 48062 ACCAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCG 48121 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||||||||| | | |||| || | ||| || ||||| || |||||||| ||||| Sbjct 48122 AGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGG 48181 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | || | ||| |||| ||| || |||| || | || || Sbjct 48182 ATTTTGGTCTTGACATTGTCAATAGTGTCGGAACTCTCAACCTCGAGGGTGATAGTCTTG 48241 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| ||| |||| ||| || ||||| Sbjct 48242 CCAGTCAAAGTCTTTACGAAGATTTGCAT 48270 >seq13853 Length=43806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| ||| | | | || |||| |||||||||||||| || ||||| Sbjct 9508 CGCAACACCAGATGGAGGGTCGATCCTTT--GAATGTTGTAGTCGGCCAATGTACGACCG 9451 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || || | | | || | | |||||| ||||| || || || || || Sbjct 9450 TCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGGGGAATACCCTCCTTG 9391 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| || | | || | || || | |||||| |||| || | | Sbjct 9390 TCCTGAATTTTTGTCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTAATC 9331 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||||| ||| || | |||||||||||| Sbjct 9330 GTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 9296 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || ||||| |||| ||| | ||||||| ||||||||||| |||||| || || Sbjct 19783 ACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCCAATGT 19724 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| |||||||| || || | | || | |||||| || || || || ||||| Sbjct 19723 GCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGGATGCC 19664 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || ||| || | | || | || ||| | ||| || |||| Sbjct 19663 CTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACCTCGAG 19604 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||| || || | |||||||||||| Sbjct 19603 GGTGATAGTCTTCCCAGTCAAGGTCTTCACGAAAATCTGCAT 19562 >seq15753 Length=130878 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | || || |||||||||||||||||| || ||||| Sbjct 123936 CGCAACACCAAATGGAGGGTCGATTCCTTTTGAATGTTGTAGTCGGCCAACGTACGACCG 123995 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||||||||| || || | | | || | | |||||| |||||||| || || | || Sbjct 123996 TCTTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGAGGGATACCCCCCTTG 124055 Query 132029 TCGGTAATTTTT 132040 || | ||||||| Sbjct 124056 TCCGGAATTTTT 124067 >seq12168 Length=30050 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| ||| | | | || || |||||||||||||||||| || ||||| Sbjct 8294 CGCAACACCAGATGGAGGGTCGATTCCTTTTGAATGTTGTAGTCGGCCAACGTACGACCG 8353 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || || | | | || | | |||||| ||||| || || || || || Sbjct 8354 TCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGGGGGATACCCTCCTTG 8413 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| || | | || | || || | |||||| || | ||| | | Sbjct 8414 TCCTGAATTTTTGTCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCCAGCGTGATC 8473 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || |||| ||| || | ||| |||||||| Sbjct 8474 GTCTTTCCTGTCAAAGTCTTCAAGAAGATCTGCAT 8508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476342581927680