Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq15394 93.3 4e-14
seq15600 91.5 1e-13
seq15654 89.7 5e-13
seq37662 87.8 2e-12
seq16149 87.8 2e-12
seq16084 87.8 2e-12
seq14446 87.8 2e-12
seq13853 87.8 2e-12
seq15753 86.0 6e-12
seq12168 86.0 6e-12
>seq15394
Length=94532
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/228 (69%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|| |||||||| || | | || || || || ||||||||||| ||| || || |
Sbjct 44382 CGTAAAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCCGCCATTGTTCGGCCA 44323
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|||||||||||||| || | ||||||| | |||||||| | || || || || ||
Sbjct 44322 TCTTCGAGCTGTTTTCCAGCGAAGATTAGCCTTTGTTGATCCGCTGGAATCCCCTCCTTC 44263
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||| || |||||| | || | || || | | || ||||| | || |
Sbjct 44262 TCTTGAATCTTCGATTTCAAATTGTCGATTGTGTCCGATGATTCGACTTCTAGGGTTATT 44203
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTAGATT 132136
||||| ||||| || ||||| | ||| |||||||||| | ||| ||||
Sbjct 44202 GTTTTCCCAGTTAGGGTTTTCACGAAGATCTGCATGATTGATT-GATT 44156
>seq15600
Length=115454
Score = 91.5 bits (100), Expect = 1e-13
Identities = 156/225 (69%), Gaps = 1/225 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| |||||||| | | | ||||| || |||| ||||||||| || ||||| |
Sbjct 103265 CGCAAGACCAAATGAAGGGTGGACTCCTTCTGAACGTTGTAGTCAGCCAATGTACGACCA 103206
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|| ||||||||||| || | | |||||||||| || ||||||| || || ||||| ||
Sbjct 103205 TCCTCGAGCTGTTTTCCTGCAAAGATTAGACGTTGCTGATCTGTGGGGATCCCTTCCTTC 103146
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || || | | || | || |||| ||| || |||| ||||
Sbjct 103145 TCTTGGATCTTCGTCTTGACATTGTCGATTGTGTCGGAGCTCTCGACATCGAGAGTCATG 103086
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA-CTTATTA 132132
|| || ||||| || ||||| | || || ||||| | || ||||
Sbjct 103085 GTCTTGCCAGTTAGGGTTTTGACAAAGATTTGCATCATCTGATTA 103041
>seq15654
Length=163759
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | || || || |||||||||||||| || ||||| ||| |||
Sbjct 112223 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAAGTACGACCATCCTCG 112164
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
|||||||| || | | |||| || | ||| || || || || ||||| || ||||| |
Sbjct 112163 AGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGA 112104
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || || | | || | |||||| | ||| || |||| || | || ||
Sbjct 112103 ATCTTAGTCTTTACATTATCGATGGTATCGCTGCTCTCGACCTCGAGGGTGATGGTCTTT 112044
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| |||| ||| |||| ||||||||||||
Sbjct 112043 CCCGTCAAAGTCTTTACGAAAATCTGCAT 112015
>seq37662
Length=1545
Score = 87.8 bits (96), Expect = 2e-12
Identities = 155/225 (69%), Gaps = 1/225 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| |||||||| | | | ||||| || |||| ||| ||||| || ||||| |
Sbjct 268 CGCAAGACCAAATGAAGGGTGGACTCCTTCTGAACGTTATAGTCAGCCAATGTACGACCA 327
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|| ||||||||||| || | | |||||||||| || ||||||| || || ||||| ||
Sbjct 328 TCCTCGAGCTGTTTTCCTGCAAAGATTAGACGTTGCTGATCTGTGGGGATCCCTTCCTTC 387
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || || | | || | || |||| ||| || |||| ||||
Sbjct 388 TCTTGGATCTTCGTCTTGACATTGTCGATTGTGTCGGAGCTCTCGACATCGAGAGTCATG 447
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA-CTTATTA 132132
|| || ||||| || ||||| | || || ||||| | || ||||
Sbjct 448 GTCTTGCCAGTTAGGGTTTTGACAAAGATTTGCATCATCTGATTA 492
>seq16149
Length=224952
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
|||| || || || |||||||||||| | ||||| ||||| |||||||| ||||
Sbjct 103658 TTGATTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCGTCTTCAAGCTGTTTTCCGG 103599
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
|||| ||||| ||||| || ||||| |||||||| || || |||||| ||||
Sbjct 103598 CGAAGATGAGACGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGAATTTTGGTCTTCA 103539
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| || | || |||| | || || || | || | ||| || || || || ||||
Sbjct 103538 CATTGTCGATGGTGTCGGAGGATTCAACCTCCAATGTTATCGTCTTCCCCGTTAGGGTTT 103479
Query 132108 TTATGAAAATCTGCAT 132123
| | ||| ||||||||
Sbjct 103478 TCACGAATATCTGCAT 103463
>seq16084
Length=201933
Score = 87.8 bits (96), Expect = 2e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967
|||||| ||||| || | |||| || |||||||||||||||||| | || ||
Sbjct 373 GCGCAACACCAAGTGAAGCGTTGATTCCTTTTGAATGTTGTAGTCGGCTAGTGTTCGTCC 314
Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027
||||||||||||||| || | | | ||||| || ||||| ||||| || || || || ||
Sbjct 313 ATCTTCGAGCTGTTTTCCCGCAAAAATTAGCCGTTGTTGGTCTGGTGGAATCCCCTCCTT 254
Query 132028 ATC 132030
|||
Sbjct 253 ATC 251
>seq14446
Length=62709
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
|||||| || | | | || || || |||||||||||||| || ||||| ||| ||
Sbjct 47833 AACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAAGTACGGCCATCCTC 47892
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
||||||||| | || | |||| || | ||| || || || || |||||||| |||||
Sbjct 47893 GAGCTGTTTCCAGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTATCTTG 47952
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
|| || || | | || | || ||| | ||| || |||| || | |||||
Sbjct 47953 GATCTTAGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTAATGGTTTT 48012
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
||||| | ||| || | |||||||||||||
Sbjct 48013 CCCAGTTAAAGTCTTCACGAAAATCTGCATG 48043
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
|||||||| | | || || || || ||||||||||| | ||| || || |||
Sbjct 48062 ACCAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCG 48121
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||||||||| | | |||| || | ||| || ||||| || |||||||| |||||
Sbjct 48122 AGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGG 48181
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
||||| || | | || | ||| |||| ||| || |||| || | || ||
Sbjct 48182 ATTTTGGTCTTGACATTGTCAATAGTGTCGGAACTCTCAACCTCGAGGGTGATAGTCTTG 48241
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||||| ||| |||| ||| || |||||
Sbjct 48242 CCAGTCAAAGTCTTTACGAAGATTTGCAT 48270
>seq13853
Length=43806
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/215 (69%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| |||| ||| | | | || |||| |||||||||||||| || |||||
Sbjct 9508 CGCAACACCAGATGGAGGGTCGATCCTTT--GAATGTTGTAGTCGGCCAATGTACGACCG 9451
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|| |||||||| || || | | | || | | |||||| ||||| || || || || ||
Sbjct 9450 TCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGGGGAATACCCTCCTTG 9391
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||||||| || | | || | || || | |||||| |||| || | |
Sbjct 9390 TCCTGAATTTTTGTCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTAATC 9331
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| |||||||||| ||| || | ||||||||||||
Sbjct 9330 GTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 9296
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| || ||||| |||| ||| | ||||||| ||||||||||| |||||| || ||
Sbjct 19783 ACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCCAATGT 19724
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
||| ||| |||||||| || || | | || | |||||| || || || || |||||
Sbjct 19723 GCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGGATGCC 19664
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || || ||| || | | || | || ||| | ||| || ||||
Sbjct 19663 CTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACCTCGAG 19604
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || ||||||| || || | ||||||||||||
Sbjct 19603 GGTGATAGTCTTCCCAGTCAAGGTCTTCACGAAAATCTGCAT 19562
>seq15753
Length=130878
Score = 86.0 bits (94), Expect = 6e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| |||||||| | | | || || |||||||||||||||||| || |||||
Sbjct 123936 CGCAACACCAAATGGAGGGTCGATTCCTTTTGAATGTTGTAGTCGGCCAACGTACGACCG 123995
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||||||||| || || | | | || | | |||||| |||||||| || || | ||
Sbjct 123996 TCTTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGAGGGATACCCCCCTTG 124055
Query 132029 TCGGTAATTTTT 132040
|| | |||||||
Sbjct 124056 TCCGGAATTTTT 124067
>seq12168
Length=30050
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| |||| ||| | | | || || |||||||||||||||||| || |||||
Sbjct 8294 CGCAACACCAGATGGAGGGTCGATTCCTTTTGAATGTTGTAGTCGGCCAACGTACGACCG 8353
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|| |||||||| || || | | | || | | |||||| ||||| || || || || ||
Sbjct 8354 TCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGGGGGATACCCTCCTTG 8413
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||||||| || | | || | || || | |||||| || | ||| | |
Sbjct 8414 TCCTGAATTTTTGTCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCCAGCGTGATC 8473
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || || |||| ||| || | ||| ||||||||
Sbjct 8474 GTCTTTCCTGTCAAAGTCTTCAAGAAGATCTGCAT 8508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476342581927680
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