Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq16048 205 1e-46 seq15946 201 2e-45 seq11586 201 2e-45 >seq16048 Length=246288 Score = 205 bits (226), Expect = 1e-46 Identities = 382/548 (70%), Gaps = 21/548 (4%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 |||||| |||| || ||| ||||||| || | |||| || || |||||||||||| | Sbjct 203918 AACCCGGACCGTTTCTGTA-TGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAA 203976 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGT 1455850 |||| |||| || || |||||||| || || || ||||| || ||| ||| Sbjct 203977 GAAAG-CCGAAGCATCGTTTTGGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGT- 204034 Query 1455851 CCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907 |||||| || ||| |||||| || ||||||||||||| ||||| |||||||| Sbjct 204035 -CACTGGTCAACGACCTTGACCGACGATGAACGCCATTTCATCACTCACGTTCTCGCCTT 204093 Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967 ||| ||||| ||||| || || ||||||||| || | || || ||||| ||| Sbjct 204094 CTTT-GCCGCATCTGATGGGATTGTTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGA 204152 Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027 | || | || || || ||| |||||||||||| ||||| || || || || || || | Sbjct 204153 TTCAGCTCCCCGAAGCGCGTGCGTTTTACGGGTTTCAGATTGCGATTGAGAATATTCATT 204212 Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG-AGAAGGACCAC 1456086 | || | |||||||| || | || || || | |||| | |||| |||| | Sbjct 204213 CGGAGATGTACTCGCTTTTGCTTGAGACGTATATTCAGGATTC-GTCGTTGAAGTCGAAT 204271 Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146 | ||||| || |||| ||| | || |||||| ||| ||||| || |||||| || Sbjct 204272 TTGTTTCGTGCTGTCGAGACGATTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGT 204331 Query 1456147 TGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTC 1456204 ||||| || || || || ||||| ||| || | ||| ||||| | ||| Sbjct 204332 TGGAT------TGATGGTTCTGAGACGTTTGCTGAGAGGATTATCGCTTTTGCGTGTGTC 204385 Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264 ||||| || || || || || ||||||||||| || |||||||| || ||||| || || Sbjct 204386 GAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATTTTTTGGCTTAAAAAGCGTGGACTT 204445 Query 1456265 ATGCCCGG 1456272 ||||| || Sbjct 204446 ATGCCGGG 204453 >seq15946 Length=172941 Score = 201 bits (222), Expect = 2e-45 Identities = 381/548 (70%), Gaps = 21/548 (4%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 |||||| |||| || ||| ||||||| || | |||| || || |||||||||||| | Sbjct 57983 AACCCGGACCGTTTCTGTA-TGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAA 58041 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGT 1455850 |||| |||| || || |||||||| || || || ||||| || ||| ||| Sbjct 58042 GAAAG-CCGAAGCATCGTTTTGGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGT- 58099 Query 1455851 CCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907 |||||| || ||| |||| | || ||||||||||||| ||||| |||||||| Sbjct 58100 -CACTGGTCAACGACCTTGACCGACAATGAACGCCATTTCATCACTCACGTTCTCGCCTT 58158 Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967 ||| ||||| ||||| || || ||||||||| || | || || ||||| ||| Sbjct 58159 CTTT-GCCGCATCTGATGGGATTGTTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGA 58217 Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027 | || | || || || ||| |||||||||||| ||||| || || || || || || | Sbjct 58218 TTCAGCTCCCCGAAGCGCGTGCGTTTTACGGGTTTCAGATTGCGATTGAGAATATTCATT 58277 Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG-AGAAGGACCAC 1456086 | || | |||||||| || | || || || | |||| | |||| |||| | Sbjct 58278 CGGAGATGTACTCGCTTTTGCTTGAGACGTATATTCAGGATTC-GTCGTTGAAGTCGAAT 58336 Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146 | ||||| || |||| ||| | || |||||| ||| ||||| || |||||| || Sbjct 58337 TTGTTTCGTGCTGTCGAGACGATTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGT 58396 Query 1456147 TGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTC 1456204 ||||| || || || || ||||| ||| || | ||| ||||| | ||| Sbjct 58397 TGGAT------TGATGGTTCTGAGACGTTTGCTGAGAGGATTATCGCTTTTGCGTGTGTC 58450 Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264 ||||| || || || || || ||||||||||| || |||||||| || ||||| || || Sbjct 58451 GAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATTTTTTGGCTTAAAAAGCGTGGACTT 58510 Query 1456265 ATGCCCGG 1456272 ||||| || Sbjct 58511 ATGCCGGG 58518 >seq11586 Length=26096 Score = 201 bits (222), Expect = 2e-45 Identities = 381/548 (70%), Gaps = 21/548 (4%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 |||||| |||| || ||| ||||||| || | |||| || || |||||||||||| | Sbjct 3741 AACCCGGACCGTTTCTGTA-TGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAA 3799 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGT 1455850 |||| |||| || || |||||||| || || || ||||| || ||| ||| Sbjct 3800 GAAAG-CCGAAGCATCGTTTTGGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGT- 3857 Query 1455851 CCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907 |||||| || ||| |||| | || ||||||||||||| ||||| |||||||| Sbjct 3858 -CACTGGTCAACGACCTTGACCGACAATGAACGCCATTTCATCACTCACGTTCTCGCCTT 3916 Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967 ||| ||||| ||||| || || ||||||||| || | || || ||||| ||| Sbjct 3917 CTTT-GCCGCATCTGATGGGATTGTTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGA 3975 Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027 | || | || || || ||| |||||||||||| ||||| || || || || || || | Sbjct 3976 TTCAGCTCCCCGAAGCGCGTGCGTTTTACGGGTTTCAGATTGCGATTGAGAATATTCATT 4035 Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG-AGAAGGACCAC 1456086 | || | |||||||| || | || || || | |||| | |||| |||| | Sbjct 4036 CGGAGATGTACTCGCTTTTGCTTGAGACGTATATTCAGGATTC-GTCGTTGAAGTCGAAT 4094 Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146 | ||||| || |||| ||| | || |||||| ||| ||||| || |||||| || Sbjct 4095 TTGTTTCGTGCTGTCGAGACGATTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGT 4154 Query 1456147 TGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTC 1456204 ||||| || || || || ||||| ||| || | ||| ||||| | ||| Sbjct 4155 TGGAT------TGATGGTTCTGAGACGTTTGCTGAGAGGATTATCGCTTTTGCGTGTGTC 4208 Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264 ||||| || || || || || ||||||||||| || |||||||| || ||||| || || Sbjct 4209 GAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATTTTTTGGCTTAAAAAGCGTGGACTT 4268 Query 1456265 ATGCCCGG 1456272 ||||| || Sbjct 4269 ATGCCGGG 4276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7173462379528256