Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 205 1e-46
seq15946 201 2e-45
seq11586 201 2e-45
>seq16048
Length=246288
Score = 205 bits (226), Expect = 1e-46
Identities = 382/548 (70%), Gaps = 21/548 (4%)
Strand=Plus/Plus
Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792
|||||| |||| || ||| ||||||| || | |||| || || |||||||||||| |
Sbjct 203918 AACCCGGACCGTTTCTGTA-TGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAA 203976
Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGT 1455850
|||| |||| || || |||||||| || || || ||||| || ||| |||
Sbjct 203977 GAAAG-CCGAAGCATCGTTTTGGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGT- 204034
Query 1455851 CCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907
|||||| || ||| |||||| || ||||||||||||| ||||| ||||||||
Sbjct 204035 -CACTGGTCAACGACCTTGACCGACGATGAACGCCATTTCATCACTCACGTTCTCGCCTT 204093
Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967
||| ||||| ||||| || || ||||||||| || | || || ||||| |||
Sbjct 204094 CTTT-GCCGCATCTGATGGGATTGTTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGA 204152
Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027
| || | || || || ||| |||||||||||| ||||| || || || || || || |
Sbjct 204153 TTCAGCTCCCCGAAGCGCGTGCGTTTTACGGGTTTCAGATTGCGATTGAGAATATTCATT 204212
Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG-AGAAGGACCAC 1456086
| || | |||||||| || | || || || | |||| | |||| |||| |
Sbjct 204213 CGGAGATGTACTCGCTTTTGCTTGAGACGTATATTCAGGATTC-GTCGTTGAAGTCGAAT 204271
Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146
| ||||| || |||| ||| | || |||||| ||| ||||| || |||||| ||
Sbjct 204272 TTGTTTCGTGCTGTCGAGACGATTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGT 204331
Query 1456147 TGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTC 1456204
||||| || || || || ||||| ||| || | ||| ||||| | |||
Sbjct 204332 TGGAT------TGATGGTTCTGAGACGTTTGCTGAGAGGATTATCGCTTTTGCGTGTGTC 204385
Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264
||||| || || || || || ||||||||||| || |||||||| || ||||| || ||
Sbjct 204386 GAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATTTTTTGGCTTAAAAAGCGTGGACTT 204445
Query 1456265 ATGCCCGG 1456272
||||| ||
Sbjct 204446 ATGCCGGG 204453
>seq15946
Length=172941
Score = 201 bits (222), Expect = 2e-45
Identities = 381/548 (70%), Gaps = 21/548 (4%)
Strand=Plus/Plus
Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792
|||||| |||| || ||| ||||||| || | |||| || || |||||||||||| |
Sbjct 57983 AACCCGGACCGTTTCTGTA-TGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAA 58041
Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGT 1455850
|||| |||| || || |||||||| || || || ||||| || ||| |||
Sbjct 58042 GAAAG-CCGAAGCATCGTTTTGGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGT- 58099
Query 1455851 CCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907
|||||| || ||| |||| | || ||||||||||||| ||||| ||||||||
Sbjct 58100 -CACTGGTCAACGACCTTGACCGACAATGAACGCCATTTCATCACTCACGTTCTCGCCTT 58158
Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967
||| ||||| ||||| || || ||||||||| || | || || ||||| |||
Sbjct 58159 CTTT-GCCGCATCTGATGGGATTGTTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGA 58217
Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027
| || | || || || ||| |||||||||||| ||||| || || || || || || |
Sbjct 58218 TTCAGCTCCCCGAAGCGCGTGCGTTTTACGGGTTTCAGATTGCGATTGAGAATATTCATT 58277
Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG-AGAAGGACCAC 1456086
| || | |||||||| || | || || || | |||| | |||| |||| |
Sbjct 58278 CGGAGATGTACTCGCTTTTGCTTGAGACGTATATTCAGGATTC-GTCGTTGAAGTCGAAT 58336
Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146
| ||||| || |||| ||| | || |||||| ||| ||||| || |||||| ||
Sbjct 58337 TTGTTTCGTGCTGTCGAGACGATTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGT 58396
Query 1456147 TGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTC 1456204
||||| || || || || ||||| ||| || | ||| ||||| | |||
Sbjct 58397 TGGAT------TGATGGTTCTGAGACGTTTGCTGAGAGGATTATCGCTTTTGCGTGTGTC 58450
Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264
||||| || || || || || ||||||||||| || |||||||| || ||||| || ||
Sbjct 58451 GAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATTTTTTGGCTTAAAAAGCGTGGACTT 58510
Query 1456265 ATGCCCGG 1456272
||||| ||
Sbjct 58511 ATGCCGGG 58518
>seq11586
Length=26096
Score = 201 bits (222), Expect = 2e-45
Identities = 381/548 (70%), Gaps = 21/548 (4%)
Strand=Plus/Plus
Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792
|||||| |||| || ||| ||||||| || | |||| || || |||||||||||| |
Sbjct 3741 AACCCGGACCGTTTCTGTA-TGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAA 3799
Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGT 1455850
|||| |||| || || |||||||| || || || ||||| || ||| |||
Sbjct 3800 GAAAG-CCGAAGCATCGTTTTGGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGT- 3857
Query 1455851 CCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907
|||||| || ||| |||| | || ||||||||||||| ||||| ||||||||
Sbjct 3858 -CACTGGTCAACGACCTTGACCGACAATGAACGCCATTTCATCACTCACGTTCTCGCCTT 3916
Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967
||| ||||| ||||| || || ||||||||| || | || || ||||| |||
Sbjct 3917 CTTT-GCCGCATCTGATGGGATTGTTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGA 3975
Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027
| || | || || || ||| |||||||||||| ||||| || || || || || || |
Sbjct 3976 TTCAGCTCCCCGAAGCGCGTGCGTTTTACGGGTTTCAGATTGCGATTGAGAATATTCATT 4035
Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG-AGAAGGACCAC 1456086
| || | |||||||| || | || || || | |||| | |||| |||| |
Sbjct 4036 CGGAGATGTACTCGCTTTTGCTTGAGACGTATATTCAGGATTC-GTCGTTGAAGTCGAAT 4094
Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146
| ||||| || |||| ||| | || |||||| ||| ||||| || |||||| ||
Sbjct 4095 TTGTTTCGTGCTGTCGAGACGATTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGT 4154
Query 1456147 TGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTC 1456204
||||| || || || || ||||| ||| || | ||| ||||| | |||
Sbjct 4155 TGGAT------TGATGGTTCTGAGACGTTTGCTGAGAGGATTATCGCTTTTGCGTGTGTC 4208
Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264
||||| || || || || || ||||||||||| || |||||||| || ||||| || ||
Sbjct 4209 GAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATTTTTTGGCTTAAAAAGCGTGGACTT 4268
Query 1456265 ATGCCCGG 1456272
||||| ||
Sbjct 4269 ATGCCGGG 4276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7173462379528256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |