Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq11475 425 8e-114 seq15224 232 1e-55 seq8938 134 2e-26 seq10333 114 2e-20 seq15824 111 2e-19 seq12877 102 1e-16 seq12771 86.0 9e-12 >seq11475 Length=22225 Score = 425 bits (470), Expect = 8e-114 Identities = 701/1009 (69%), Gaps = 2/1009 (0%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | ||||| | || | ||| | || |||||||| | Sbjct 12881 TGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCT 12822 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||||||| | || | || || ||| |||| || || || ||||| Sbjct 12821 ATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTTTGT 12762 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCA 176031 || ||||| || ||||| | || ||| ||| | || || ||| || || | | Sbjct 12761 AACTTCATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGC-AATTTCTTAA 12703 Query 176032 CAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTC 176091 | || || || || ||||||||| || | | | || ||| | | | || ||||||| Sbjct 12702 CCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGGGTC 12643 Query 176092 CTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTG 176151 ||||| | || ||||| || || ||| ||| | || || || ||| | ||||||| Sbjct 12642 CTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTG 12583 Query 176152 CTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGAC 176211 |||| || ||||| |||| || || || || ||| | || || || ||||| || || Sbjct 12582 CTCTTCATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGAT 12523 Query 176212 TCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCA 176271 || | || || || || || || |||||| || || || ||||| ||||| Sbjct 12522 CTGTTCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTT 12463 Query 176272 GTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTG 176331 ||| || || | || ||||||||||||||| ||||||||||| || ||||||| Sbjct 12462 CTGTATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTG 12403 Query 176332 TGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACC 176391 | ||||| || ||| ||||| | | ||| |||| || || || || ||||| ||||||| Sbjct 12402 TAGCAGCTATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGAACC 12343 Query 176392 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATG 176451 | || ||||||||||||||||||||| || | || | || || |||| || || |||| Sbjct 12342 CTTTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATG 12283 Query 176452 GCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGT 176511 | | ||| || |||||||| ||| || ||||| || | || || ||| || | Sbjct 12282 GTGCTACCGTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTT 12223 Query 176512 TCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGC 176571 | | | || || | ||||| || ||||| ||||| || || ||||| || ||||| | Sbjct 12222 TTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCC 12163 Query 176572 AAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCC 176631 |||| || |||||||| ||| ||||| |||||| | || ||||||||||| ||||| | Sbjct 12162 AAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTAC 12103 Query 176632 CTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTG 176691 | || | ||| | ||| | | |||| | | || || || | || || |||| Sbjct 12102 CAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTG 12043 Query 176692 CTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCT 176751 | ||||| || || |||||| || | ||||| ||||||||||| ||||| ||||||| Sbjct 12042 CCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGACTTTCT 11983 Query 176752 ACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAAC 176811 |||| || || || || | || ||||| | | || |||||||| || ||||| | Sbjct 11982 ACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGC 11923 Query 176812 CACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 | ||||| || ||||||| || || |||||||| | || ||||| Sbjct 11922 CTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 11874 >seq15224 Length=172684 Score = 232 bits (256), Expect = 1e-55 Identities = 296/405 (73%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 174855 GCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAA 174914 ||||| || || || |||||||| ||| | || || ||| | ||||||| | |||||| Sbjct 89319 GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCAA 89378 Query 174915 GGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTC 174974 || || || || | ||||| || || || ||||| || ||||||| |||| | || Sbjct 89379 GGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGTA 89438 Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034 ||||| || || || |||||| | |||||||| || ||||||||||| || || ||||| Sbjct 89439 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTA 89498 Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCG 175093 ||||| || || | || || ||||||||||| |||| || || | ||| | | Sbjct 89499 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATTAG 89557 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 || || || |||| ||| || || | ||||||| || || ||||| ||||| || Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 ||||| ||||| || || |||| || || ||||| |||||||||||||| ||| || Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGT 175258 |||||| || || || | |||||||||||||| || ||||| || Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 175125 GGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTC 175184 ||||||| || || ||||| ||||| || ||||| ||||| || || ||||| || || Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 175185 GGTCGTTTGATCTTC------CAATACGCTTCATTCAACAACTCACGCTCACTCCACTTC 175238 ||||| ||||||||| ||||| ||| |||||||| || || || | |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 175239 TTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATG 175298 |||||||| || ||||| || || ||||| ||||| || || | ||| || ||| ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 175299 GC 175300 || Sbjct 89914 GC 89915 Score = 105 bits (116), Expect = 1e-17 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 174513 TGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGT-TTCATTATCGC 174571 ||||| |||||| | |||||||||||||| || | |||||| | ||| || ||||| || Sbjct 88977 TGGTTTGGTGTTTTGATGATTCCTACATTATTGACTGCAACT-TCTGTATTTATTATAGC 89035 Query 174572 TTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACT 174631 ||| | | |||||| ||||| | || || || || |||||||| || | || || || Sbjct 89036 CTTCATTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCT 89095 Query 174632 CATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTC 174676 | || |||||||| || || |||||||| || |||||| ||| Sbjct 89096 ACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTC 89140 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 174585 CCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAAC 174644 || ||||| | || || || || |||||||| || | || || || | || |||||| Sbjct 89144 CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAAC 89203 Query 174645 AACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCA 174704 || || || |||||||| || |||||| ||| || || || | || || || ||| Sbjct 89204 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCA 89263 Query 174705 ATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTT 174753 || ||||||||||| | | || || ||| | || || |||||||||| Sbjct 89264 ATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312 >seq8938 Length=12132 Score = 134 bits (148), Expect = 2e-26 Identities = 219/313 (70%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 176550 ACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTT 176609 || || ||||| || ||||| ||| | || |||||||| ||| ||||| ||||| | Sbjct 2038 ACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGTTA 1979 Query 176610 CACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATT 176669 || ||||||||||| ||||| || || | | | | ||| | | |||| | | Sbjct 1978 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAGTC 1919 Query 176670 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGAT-TA-GAGCAGCAG 176727 || || || | || || ||||| ||||| || || |||||| || || | ||||| | Sbjct 1918 GGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGCCG 1859 Query 176728 AAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAG 176787 |||||||||| ||||| ||||||||||| || || || || | || ||||| | | | Sbjct 1858 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTG 1799 Query 176788 CATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTAC 176847 | ||||||| || ||||| || ||||| || ||||||| || || ||||||| Sbjct 1798 CTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 1739 Query 176848 CTAGAGGTAACGC 176860 | | || ||||| Sbjct 1738 CCCGTGGAAACGC 1726 >seq10333 Length=16991 Score = 114 bits (126), Expect = 2e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 176411 TGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATAC 176470 ||||||| || | || | || || |||| || || ||||| | ||| || |||||||| Sbjct 6646 TGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATAC 6705 Query 176471 CCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGA 176530 ||| || ||||| || | || || ||| || || | | || || | || Sbjct 6706 TTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGA 6765 Query 176531 AGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTT 176590 ||| || ||||| ||||| || || ||||| || ||||| ||||| || |||||||| || Sbjct 6766 AGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTT 6825 Query 176591 TAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGG 176648 | ||||| |||||| | || ||||||||||| ||||| || || | ||| | ||| Sbjct 6826 TTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACAGGTTTATGG 6883 >seq15824 Length=139560 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 176223 CGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTT 176282 || || || || || || |||||| || || || ||||| ||||| ||| || || Sbjct 61301 CGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTA 61242 Query 176283 CTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATC 176342 | || ||||||| ||||||| ||||||||||| || |||||||| ||||| || Sbjct 61241 ATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATT 61182 Query 176343 TTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATG 176402 ||| ||||| | | ||| |||| || || || || ||||| | |||| | || |||||| Sbjct 61181 TTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACGCAGAACTCTTTTCATATG 61122 Query 176403 ATGGGA 176408 |||||| Sbjct 61121 ATGGGA 61116 >seq12877 Length=40778 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 176685 CTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAA 176744 ||| |||| ||||| || || |||||| || | ||||| ||||||||||| ||||| Sbjct 746 CTTAGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAG 805 Query 176745 ACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTG 176804 ||||||||||| || || || || | || ||||| | | || |||||||| || Sbjct 806 ACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAA 865 Query 176805 GATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || ||||| || ||||||| || || |||||||| | || ||||| Sbjct 866 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 921 >seq12771 Length=31889 Score = 86.0 bits (94), Expect = 9e-12 Identities = 173/254 (68%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 176160 GGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGT 176219 ||| | |||| || || || || ||| | || || || ||||| || || || Sbjct 8621 GGTACTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAA 8562 Query 176220 ATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTT 176279 | || || || || || || |||||| || | || | ||| ||||| ||| || Sbjct 8561 TTGCGCCCTTATAATGCAATAGCATTCTCGGGCCAAATTGTTGTTTTTGTTTCTGTATTC 8502 Query 176280 CTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGG----TGTGGC 176335 || | || ||||||| ||||||| ||||||||||| || ||||| ||| || Sbjct 8501 CTAATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTATGTAGC 8442 Query 176336 AGCAATCTTTAGATTCCTATTGTTTCTTC-AGGGTTTCCACAACTGGACACTGAACCCCT 176394 | | || ||| ||| | | | ||| ||| ||||||| || || ||||| ||||||| | Sbjct 8441 AACTATTTTTCGATCCATCCTCTTTTTTCGAGGGTTT-CATAATTGGACGTTGAACCCTT 8383 Query 176395 TCCATATGATGGGA 176408 | |||||||||||| Sbjct 8382 TTCATATGATGGGA 8369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729518211677440