Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_026927.1
Length=228143
Score E
Sequences producing significant alignments: (Bits) Value
seq11475 425 8e-114
seq15224 232 1e-55
seq8938 134 2e-26
seq10333 114 2e-20
seq15824 111 2e-19
seq12877 102 1e-16
seq12771 86.0 9e-12
>seq11475
Length=22225
Score = 425 bits (470), Expect = 8e-114
Identities = 701/1009 (69%), Gaps = 2/1009 (0%)
Strand=Plus/Minus
Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912
||||||| |||| |||||| | | ||||| | || | ||| | || |||||||| |
Sbjct 12881 TGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCT 12822
Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972
| | || |||| ||||||| | || | || || ||| |||| || || || |||||
Sbjct 12821 ATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTTTGT 12762
Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCA 176031
|| ||||| || ||||| | || ||| ||| | || || ||| || || | |
Sbjct 12761 AACTTCATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGC-AATTTCTTAA 12703
Query 176032 CAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTC 176091
| || || || || ||||||||| || | | | || ||| | | | || |||||||
Sbjct 12702 CCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGGGTC 12643
Query 176092 CTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTG 176151
||||| | || ||||| || || ||| ||| | || || || ||| | |||||||
Sbjct 12642 CTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTG 12583
Query 176152 CTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGAC 176211
|||| || ||||| |||| || || || || ||| | || || || ||||| || ||
Sbjct 12582 CTCTTCATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGAT 12523
Query 176212 TCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCA 176271
|| | || || || || || || |||||| || || || ||||| |||||
Sbjct 12522 CTGTTCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTT 12463
Query 176272 GTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTG 176331
||| || || | || ||||||||||||||| ||||||||||| || |||||||
Sbjct 12462 CTGTATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTG 12403
Query 176332 TGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACC 176391
| ||||| || ||| ||||| | | ||| |||| || || || || ||||| |||||||
Sbjct 12402 TAGCAGCTATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGAACC 12343
Query 176392 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATG 176451
| || ||||||||||||||||||||| || | || | || || |||| || || ||||
Sbjct 12342 CTTTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATG 12283
Query 176452 GCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGT 176511
| | ||| || |||||||| ||| || ||||| || | || || ||| || |
Sbjct 12282 GTGCTACCGTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTT 12223
Query 176512 TCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGC 176571
| | | || || | ||||| || ||||| ||||| || || ||||| || ||||| |
Sbjct 12222 TTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCC 12163
Query 176572 AAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCC 176631
|||| || |||||||| ||| ||||| |||||| | || ||||||||||| ||||| |
Sbjct 12162 AAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTAC 12103
Query 176632 CTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTG 176691
| || | ||| | ||| | | |||| | | || || || | || || ||||
Sbjct 12102 CAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTG 12043
Query 176692 CTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCT 176751
| ||||| || || |||||| || | ||||| ||||||||||| ||||| |||||||
Sbjct 12042 CCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGACTTTCT 11983
Query 176752 ACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAAC 176811
|||| || || || || | || ||||| | | || |||||||| || ||||| |
Sbjct 11982 ACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGC 11923
Query 176812 CACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860
| ||||| || ||||||| || || |||||||| | || |||||
Sbjct 11922 CTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 11874
>seq15224
Length=172684
Score = 232 bits (256), Expect = 1e-55
Identities = 296/405 (73%), Gaps = 2/405 (0%)
Strand=Plus/Plus
Query 174855 GCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAA 174914
||||| || || || |||||||| ||| | || || ||| | ||||||| | ||||||
Sbjct 89319 GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCAA 89378
Query 174915 GGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTC 174974
|| || || || | ||||| || || || ||||| || ||||||| |||| | ||
Sbjct 89379 GGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGTA 89438
Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034
||||| || || || |||||| | |||||||| || ||||||||||| || || |||||
Sbjct 89439 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTA 89498
Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCG 175093
||||| || || | || || ||||||||||| |||| || || | ||| | |
Sbjct 89499 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATTAG 89557
Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153
|| || || |||| ||| || || | ||||||| || || ||||| ||||| ||
Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617
Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213
||||| ||||| || || |||| || || ||||| |||||||||||||| ||| ||
Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677
Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGT 175258
|||||| || || || | |||||||||||||| || ||||| ||
Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722
Score = 122 bits (134), Expect = 1e-22
Identities = 136/182 (75%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 175125 GGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTC 175184
||||||| || || ||||| ||||| || ||||| ||||| || || ||||| || ||
Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793
Query 175185 GGTCGTTTGATCTTC------CAATACGCTTCATTCAACAACTCACGCTCACTCCACTTC 175238
||||| ||||||||| ||||| ||| |||||||| || || || | ||||||
Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853
Query 175239 TTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATG 175298
|||||||| || ||||| || || ||||| ||||| || || | ||| || ||| |||
Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913
Query 175299 GC 175300
||
Sbjct 89914 GC 89915
Score = 105 bits (116), Expect = 1e-17
Identities = 124/165 (75%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 174513 TGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGT-TTCATTATCGC 174571
||||| |||||| | |||||||||||||| || | |||||| | ||| || ||||| ||
Sbjct 88977 TGGTTTGGTGTTTTGATGATTCCTACATTATTGACTGCAACT-TCTGTATTTATTATAGC 89035
Query 174572 TTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACT 174631
||| | | |||||| ||||| | || || || || |||||||| || | || || ||
Sbjct 89036 CTTCATTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCT 89095
Query 174632 CATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTC 174676
| || |||||||| || || |||||||| || |||||| |||
Sbjct 89096 ACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTC 89140
Score = 84.2 bits (92), Expect = 3e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 174585 CCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAAC 174644
|| ||||| | || || || || |||||||| || | || || || | || ||||||
Sbjct 89144 CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAAC 89203
Query 174645 AACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCA 174704
|| || || |||||||| || |||||| ||| || || || | || || || |||
Sbjct 89204 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCA 89263
Query 174705 ATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTT 174753
|| ||||||||||| | | || || ||| | || || ||||||||||
Sbjct 89264 ATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312
>seq8938
Length=12132
Score = 134 bits (148), Expect = 2e-26
Identities = 219/313 (70%), Gaps = 2/313 (1%)
Strand=Plus/Minus
Query 176550 ACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTT 176609
|| || ||||| || ||||| ||| | || |||||||| ||| ||||| ||||| |
Sbjct 2038 ACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGTTA 1979
Query 176610 CACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATT 176669
|| ||||||||||| ||||| || || | | | | ||| | | |||| | |
Sbjct 1978 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAGTC 1919
Query 176670 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGAT-TA-GAGCAGCAG 176727
|| || || | || || ||||| ||||| || || |||||| || || | ||||| |
Sbjct 1918 GGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGCCG 1859
Query 176728 AAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAG 176787
|||||||||| ||||| ||||||||||| || || || || | || ||||| | | |
Sbjct 1858 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTG 1799
Query 176788 CATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTAC 176847
| ||||||| || ||||| || ||||| || ||||||| || || |||||||
Sbjct 1798 CTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 1739
Query 176848 CTAGAGGTAACGC 176860
| | || |||||
Sbjct 1738 CCCGTGGAAACGC 1726
>seq10333
Length=16991
Score = 114 bits (126), Expect = 2e-20
Identities = 168/238 (71%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 176411 TGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATAC 176470
||||||| || | || | || || |||| || || ||||| | ||| || ||||||||
Sbjct 6646 TGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATAC 6705
Query 176471 CCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGA 176530
||| || ||||| || | || || ||| || || | | || || | ||
Sbjct 6706 TTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGA 6765
Query 176531 AGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTT 176590
||| || ||||| ||||| || || ||||| || ||||| ||||| || |||||||| ||
Sbjct 6766 AGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTT 6825
Query 176591 TAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGG 176648
| ||||| |||||| | || ||||||||||| ||||| || || | ||| | |||
Sbjct 6826 TTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACAGGTTTATGG 6883
>seq15824
Length=139560
Score = 111 bits (122), Expect = 2e-19
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 176223 CGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTT 176282
|| || || || || || |||||| || || || ||||| ||||| ||| || ||
Sbjct 61301 CGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTA 61242
Query 176283 CTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATC 176342
| || ||||||| ||||||| ||||||||||| || |||||||| ||||| ||
Sbjct 61241 ATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATT 61182
Query 176343 TTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATG 176402
||| ||||| | | ||| |||| || || || || ||||| | |||| | || ||||||
Sbjct 61181 TTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACGCAGAACTCTTTTCATATG 61122
Query 176403 ATGGGA 176408
||||||
Sbjct 61121 ATGGGA 61116
>seq12877
Length=40778
Score = 102 bits (112), Expect = 1e-16
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 176685 CTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAA 176744
||| |||| ||||| || || |||||| || | ||||| ||||||||||| |||||
Sbjct 746 CTTAGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAG 805
Query 176745 ACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTG 176804
||||||||||| || || || || | || ||||| | | || |||||||| ||
Sbjct 806 ACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAA 865
Query 176805 GATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860
||||| || ||||| || ||||||| || || |||||||| | || |||||
Sbjct 866 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 921
>seq12771
Length=31889
Score = 86.0 bits (94), Expect = 9e-12
Identities = 173/254 (68%), Gaps = 6/254 (2%)
Strand=Plus/Minus
Query 176160 GGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGT 176219
||| | |||| || || || || ||| | || || || ||||| || || ||
Sbjct 8621 GGTACTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAA 8562
Query 176220 ATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTT 176279
| || || || || || || |||||| || | || | ||| ||||| ||| ||
Sbjct 8561 TTGCGCCCTTATAATGCAATAGCATTCTCGGGCCAAATTGTTGTTTTTGTTTCTGTATTC 8502
Query 176280 CTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGG----TGTGGC 176335
|| | || ||||||| ||||||| ||||||||||| || ||||| ||| ||
Sbjct 8501 CTAATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTATGTAGC 8442
Query 176336 AGCAATCTTTAGATTCCTATTGTTTCTTC-AGGGTTTCCACAACTGGACACTGAACCCCT 176394
| | || ||| ||| | | | ||| ||| ||||||| || || ||||| ||||||| |
Sbjct 8441 AACTATTTTTCGATCCATCCTCTTTTTTCGAGGGTTT-CATAATTGGACGTTGAACCCTT 8383
Query 176395 TCCATATGATGGGA 176408
| ||||||||||||
Sbjct 8382 TTCATATGATGGGA 8369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729518211677440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |