Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq11475 435 4e-117 seq15224 280 2e-70 seq8938 120 4e-22 seq15824 96.9 4e-15 seq12877 91.5 2e-13 seq14024 86.0 8e-12 seq13902 86.0 8e-12 >seq11475 Length=22225 Score = 435 bits (482), Expect = 4e-117 Identities = 683/971 (70%), Gaps = 6/971 (1%) Strand=Plus/Minus Query 179253 GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCC 179312 || || || || ||||| ||||||||||| || | || |||| ||||||| | || Sbjct 12853 GACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCT 12794 Query 179313 ATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCT 179372 | || |||||| |||| || || | ||||| || ||||| || || || | || Sbjct 12793 GTAGGGGGTTGGTTTACAGGTACGACGTTTGTAACTTCATGGTATACTCATGGGTTGGCC 12734 Query 179373 AGTTCCTATCTTGAGGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGATG 179430 ||||| ||| | || || ||| | ||||||| | ||||| || || || |||||| || Sbjct 12733 AGTTCATATTTGGAAGGCTGCAA--TTTCTTAACCGCAGCCGTTTCTACTCCTGCTAATA 12676 Query 179431 CTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGT 179490 | | | || ||| | | | || ||||||||||| | || || |||| || | Sbjct 12675 GTTTAGCACACTCTTTGTTGTTGCTGTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTT 12616 Query 179491 GGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTG 179550 |||| ||| | || || || |||| ||| || ||||| || ||||| |||| || || | Sbjct 12615 GGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAG 12556 Query 179551 GTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGTATCAGACCTTACAATGCG 179609 |||| ||| | | ||||| ||||||||||| ||| | | | | ||||| ||||| Sbjct 12555 GTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAATTGC-GCCCTTATAATGCA 12497 Query 179610 ATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGA 179669 || || || || || || |||||||| || || ||| ||||| || ||||| | || Sbjct 12496 ATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGT 12437 Query 179670 CAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTG 179729 || || |||||| || ||||| |||||||| || || || || | ||| | || Sbjct 12436 CAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATTTTTCGATTCATCCTC 12377 Query 179730 TTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGT 179789 || |||| || || || || |||||||| ||||| || ||||||||||||||||||||| Sbjct 12376 TTTTTTCAAGGGTTTCATAATTGGACGCTGAACCCTTTTCATATGATGGGAGTTGCTGGT 12317 Query 179790 ATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTAT 179849 || | || | || ||||| | ||||| ||||| | ||| ||||| ||||| || | Sbjct 12316 GTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTC 12257 Query 179850 GAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACT 179909 || ||||| || |||||||| || ||| ||| | | || || | ||||| ||| Sbjct 12256 GAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAACT 12197 Query 179910 TATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAAC 179969 ||||| |||||||| || ||||| || ||||| || || || || |||| ||||| || Sbjct 12196 TATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAAT 12137 Query 179970 AAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCT 180029 || || ||| | ||||| || ||||| ||||| || || | ||| |||||| || Sbjct 12136 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 12077 Query 180030 ATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATC 180089 |||| | | ||||| || | ||||| ||||| || || ||||| || || || Sbjct 12076 CTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATA 12017 Query 180090 AGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAA 180149 | ||||| |||||||| || |||||||| ||||||||||| || ||||| | |||||| Sbjct 12016 CGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAA 11957 Query 180150 GGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAA 180209 || | ||||| ||| |||| | ||||| || ||||| | ||||||| || Sbjct 11956 GGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 11897 Query 180210 GAAGTTCTGCC 180220 || ||||| || Sbjct 11896 GAGGTTCTACC 11886 >seq15224 Length=172684 Score = 280 bits (310), Expect = 2e-70 Identities = 305/405 (75%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295 ||||| || ||||| || ||||| || | || || ||| || ||||||| | |||||| Sbjct 89319 GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCAA 89378 Query 178296 GGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 178355 || |||||||| | ||||| | || || |||||||| ||||||| |||| |||| Sbjct 89379 GGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGTA 89438 Query 178356 TTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTA 178415 ||||| || || |||||||| || |||||||| || |||||||||||||| || |||||| Sbjct 89439 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTA 89498 Query 178416 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGT 178475 ||||| || || || || ||||| ||||| ||||| ||||| || ||| | || | Sbjct 89499 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGG 89558 Query 178476 GAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACA 178535 ||||| || |||| ||||| || | ||||| | || || ||||| ||||| || Sbjct 89559 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACT 89618 Query 178536 TACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTC 178595 || || ||||| || || |||| || || ||||| |||||||||||||||||| ||| Sbjct 89619 TATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTTC 89678 Query 178596 AACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTA 178640 ||||| || ||||| | ||||||||| | || || ||||| ||| Sbjct 89679 AACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTA 89723 Score = 113 bits (124), Expect = 5e-20 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 178506 GGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTC 178565 ||||| | || || ||||| ||||| || || || ||||| || || ||||| || || Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 178566 GGTCGTTTGATCTTC------CAATATGCTTCATTCAACAACTCACGTTCACTGCACTTC 178619 ||||| ||||||||| ||||||||| |||||||| || ||||| | |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 178620 TTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATG 178679 ||| | || || ||||| ||||| || || ||||| || || | || | ||||| ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 178680 GC 178681 || Sbjct 89914 GC 89915 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 177978 ATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCT 178037 || || || || |||||||| || | || || || | || || ||||| || || ||| Sbjct 89156 ATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTTCT 89215 Query 178038 GGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCC 178097 ||||| || |||| |||| || || || | || || ||||| || |||||||| Sbjct 89216 GGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAGCA 89275 Query 178098 GCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 178134 ||||| ||||||||||| | ||||| |||||||||| Sbjct 89276 GCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312 >seq8938 Length=12132 Score = 120 bits (132), Expect = 4e-22 Identities = 209/303 (69%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 179920 TCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGC 179979 |||| || ||||| || ||||| || | || || |||| ||||| || || | ||| Sbjct 2040 TCACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGT 1981 Query 179980 TTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTA 180039 | ||||| || ||||| ||||| || || | | | |||||| || |||| | Sbjct 1980 TACATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAG 1921 Query 180040 TTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCA--GAGCAGC 180097 | ||||| || | ||||| ||||| || || ||||| || || || | ||||| Sbjct 1920 TCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGC 1861 Query 180098 AGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACG 180157 |||||||| || |||||||| ||||||||||| || ||||| | |||||||| | || Sbjct 1860 CGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCG 1801 Query 180158 TGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCT 180217 ||| ||| ||| | ||||| || ||||| | ||||||| || || ||||| Sbjct 1800 TGCTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCT 1741 Query 180218 GCC 180220 || Sbjct 1740 ACC 1738 >seq15824 Length=139560 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 179565 CAATTTGAACTTGCTCGCCTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGT 179624 ||||| ||||||||||| ||| | | ||||| ||||| || || || || || Sbjct 61331 CAATTCGAACTTGCTCGATCTATTTAATTGCGCCCTTATAATGCAATAGCATTCTCGGGC 61272 Query 179625 CCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTT 179684 || |||||||| || || ||| ||||| || ||||| | | || || |||||| Sbjct 61271 CCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGATCAATCTGGTTGGTTC 61212 Query 179685 TTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTC 179744 || ||||| |||||||| || || || || | ||| | || || |||| || || Sbjct 61211 TTTGCGCCTAGTTTTGGTGTAGCAGCTATTTTTCGATTCATCCTATTTTTTCAAGGGTTT 61152 Query 179745 CACAACTGGACGCTCAACCCCTTCCATATGATGGGA 179780 || || ||||||| ||| | || |||||||||||| Sbjct 61151 CATAATTGGACGCAGAACTCTTTTCATATGATGGGA 61116 >seq12877 Length=40778 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 180053 CAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTT 180112 || |||| |||| || || ||||| || || || | ||||| |||||||| || || Sbjct 742 CACCCTTAGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATT 801 Query 180113 TGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACC 180172 |||||| ||||||||||| || ||||| | |||||||| | ||||| ||| |||| | Sbjct 802 TGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGC 861 Query 180173 AGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220 ||||| || ||||| | ||||||| || || ||||| || Sbjct 862 TCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 909 >seq14024 Length=49420 Score = 86.0 bits (94), Expect = 8e-12 Identities = 225/337 (67%), Gaps = 11/337 (3%) Strand=Plus/Plus Query 179253 GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCC 179312 |||| || || ||||| |||| ||| || || | || |||| ||||||| |||| Sbjct 34667 GATCATTTCGTTTTTGTAGGTTAGTCGGGTCTATTGCTCTTTCCTTGTGCTTATTTTGCT 34726 Query 179313 ATTGGCGGTTGGCTTACT-----GGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTC 179367 | || |||||| ||| | || || | ||||| || ||||| || || || Sbjct 34727 GTAGGGGGTTGGTTTAATTTACAGGTACGACGTTTGTAACTTCATGGTATACTCATGGGA 34786 Query 179368 TTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGC 179425 | || ||||| ||| | || || ||| | ||||||| | ||| | || || ||||| Sbjct 34787 TGGCCAGTTCATATTTGGAAGGCTGCAA--TTTCTTAACCGCAATCGATTCTACTCCTGC 34844 Query 179426 TGATGCTATGGGTCATTCTCTTCTTCTACTT-TGGGGTCCTGAGTCTCAGGGGAATTTCC 179484 | || | | | || ||| || || | || ||||||||||| | || || |||| Sbjct 34845 TAATAGTTTAGCACACTCT-TTGTTGTTGTTGTGGGGTCCTGAAGCACAAGGCGATTTTA 34903 Query 179485 AGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTC 179544 || ||| | ||| | || || | |||| ||| || ||||| || ||||| |||| | Sbjct 34904 CTCGTTGGCGTCAATTAGGCGGCCAGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGGAC 34963 Query 179545 TCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG 179581 | || ||| | ||| | | ||||| |||||||||| Sbjct 34964 TAATAGGTCTTATGTTACGCCAATTCAAACTTGCTCG 35000 >seq13902 Length=44788 Score = 86.0 bits (94), Expect = 8e-12 Identities = 186/268 (69%), Gaps = 9/268 (3%) Strand=Plus/Minus Query 179370 GCTAGTTCCTATCTTGA--GGGTGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCT 179426 || ||||| ||| |||| || || ||| ||||||| | |||||||| || || |||||| Sbjct 6347 GCCAGTTCATAT-TTGAAAGGCTG-TAA-TTTCTTAACCGCAGCTGTTTCCACTCCTGCT 6291 Query 179427 GATGCTATGGGTCATTCTCTTCTTCTA-CTTTGGGGTCCTGAGTCTCAGGGGAATTTCCA 179485 || | | | || ||| || || | || ||| ||||||| | || || |||| Sbjct 6290 AATAGTTTAGCACACTCTTTTGTTGTTTCTGTGGAGTCCTGAAGCACAAGGCGATTTTAC 6231 Query 179486 GCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCT 179545 || ||||| ||| | || || | |||| ||| || | ||| || ||||| ||| || Sbjct 6230 TCGTTGGTGTCAATTAGGCGGCCCGTGGACTTTTGTTGATCTTCATGGTGCTTTCAGACT 6171 Query 179546 CATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGTATCAGACCTTACA 179604 || ||||| ||| | | ||||| ||||||||||| ||| || | | ||||| | Sbjct 6170 AATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTG-TTCAATTGCGCCCTTATA 6112 Query 179605 ATGCGATTGCTTTTTCTGGTCCTATTGC 179632 |||| || || || || || || ||||| Sbjct 6111 ATGCAATAGCATTCTCGGGCCCAATTGC 6084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605668052989440