Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq11475 435 4e-117
seq15224 280 2e-70
seq8938 120 4e-22
seq15824 96.9 4e-15
seq12877 91.5 2e-13
seq14024 86.0 8e-12
seq13902 86.0 8e-12
>seq11475
Length=22225
Score = 435 bits (482), Expect = 4e-117
Identities = 683/971 (70%), Gaps = 6/971 (1%)
Strand=Plus/Minus
Query 179253 GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCC 179312
|| || || || ||||| ||||||||||| || | || |||| ||||||| | ||
Sbjct 12853 GACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCT 12794
Query 179313 ATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCT 179372
| || |||||| |||| || || | ||||| || ||||| || || || | ||
Sbjct 12793 GTAGGGGGTTGGTTTACAGGTACGACGTTTGTAACTTCATGGTATACTCATGGGTTGGCC 12734
Query 179373 AGTTCCTATCTTGAGGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGATG 179430
||||| ||| | || || ||| | ||||||| | ||||| || || || |||||| ||
Sbjct 12733 AGTTCATATTTGGAAGGCTGCAA--TTTCTTAACCGCAGCCGTTTCTACTCCTGCTAATA 12676
Query 179431 CTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGT 179490
| | | || ||| | | | || ||||||||||| | || || |||| || |
Sbjct 12675 GTTTAGCACACTCTTTGTTGTTGCTGTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTT 12616
Query 179491 GGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTG 179550
|||| ||| | || || || |||| ||| || ||||| || ||||| |||| || || |
Sbjct 12615 GGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAG 12556
Query 179551 GTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGTATCAGACCTTACAATGCG 179609
|||| ||| | | ||||| ||||||||||| ||| | | | | ||||| |||||
Sbjct 12555 GTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAATTGC-GCCCTTATAATGCA 12497
Query 179610 ATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGA 179669
|| || || || || || |||||||| || || ||| ||||| || ||||| | ||
Sbjct 12496 ATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGT 12437
Query 179670 CAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTG 179729
|| || |||||| || ||||| |||||||| || || || || | ||| | ||
Sbjct 12436 CAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATTTTTCGATTCATCCTC 12377
Query 179730 TTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGT 179789
|| |||| || || || || |||||||| ||||| || |||||||||||||||||||||
Sbjct 12376 TTTTTTCAAGGGTTTCATAATTGGACGCTGAACCCTTTTCATATGATGGGAGTTGCTGGT 12317
Query 179790 ATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTAT 179849
|| | || | || ||||| | ||||| ||||| | ||| ||||| ||||| || |
Sbjct 12316 GTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTC 12257
Query 179850 GAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACT 179909
|| ||||| || |||||||| || ||| ||| | | || || | ||||| |||
Sbjct 12256 GAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAACT 12197
Query 179910 TATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAAC 179969
||||| |||||||| || ||||| || ||||| || || || || |||| ||||| ||
Sbjct 12196 TATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAAT 12137
Query 179970 AAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCT 180029
|| || ||| | ||||| || ||||| ||||| || || | ||| |||||| ||
Sbjct 12136 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 12077
Query 180030 ATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATC 180089
|||| | | ||||| || | ||||| ||||| || || ||||| || || ||
Sbjct 12076 CTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATA 12017
Query 180090 AGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAA 180149
| ||||| |||||||| || |||||||| ||||||||||| || ||||| | ||||||
Sbjct 12016 CGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAA 11957
Query 180150 GGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAA 180209
|| | ||||| ||| |||| | ||||| || ||||| | ||||||| ||
Sbjct 11956 GGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 11897
Query 180210 GAAGTTCTGCC 180220
|| ||||| ||
Sbjct 11896 GAGGTTCTACC 11886
>seq15224
Length=172684
Score = 280 bits (310), Expect = 2e-70
Identities = 305/405 (75%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295
||||| || ||||| || ||||| || | || || ||| || ||||||| | ||||||
Sbjct 89319 GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCAA 89378
Query 178296 GGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 178355
|| |||||||| | ||||| | || || |||||||| ||||||| |||| ||||
Sbjct 89379 GGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGTA 89438
Query 178356 TTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTA 178415
||||| || || |||||||| || |||||||| || |||||||||||||| || ||||||
Sbjct 89439 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTA 89498
Query 178416 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGT 178475
||||| || || || || ||||| ||||| ||||| ||||| || ||| | || |
Sbjct 89499 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGG 89558
Query 178476 GAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACA 178535
||||| || |||| ||||| || | ||||| | || || ||||| ||||| ||
Sbjct 89559 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACT 89618
Query 178536 TACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTC 178595
|| || ||||| || || |||| || || ||||| |||||||||||||||||| |||
Sbjct 89619 TATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTTC 89678
Query 178596 AACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTA 178640
||||| || ||||| | ||||||||| | || || ||||| |||
Sbjct 89679 AACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTA 89723
Score = 113 bits (124), Expect = 5e-20
Identities = 134/182 (74%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 178506 GGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTC 178565
||||| | || || ||||| ||||| || || || ||||| || || ||||| || ||
Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793
Query 178566 GGTCGTTTGATCTTC------CAATATGCTTCATTCAACAACTCACGTTCACTGCACTTC 178619
||||| ||||||||| ||||||||| |||||||| || ||||| | ||||||
Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853
Query 178620 TTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATG 178679
||| | || || ||||| ||||| || || ||||| || || | || | ||||| |||
Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913
Query 178680 GC 178681
||
Sbjct 89914 GC 89915
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 177978 ATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCT 178037
|| || || || |||||||| || | || || || | || || ||||| || || |||
Sbjct 89156 ATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTTCT 89215
Query 178038 GGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCC 178097
||||| || |||| |||| || || || | || || ||||| || ||||||||
Sbjct 89216 GGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAGCA 89275
Query 178098 GCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 178134
||||| ||||||||||| | ||||| ||||||||||
Sbjct 89276 GCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312
>seq8938
Length=12132
Score = 120 bits (132), Expect = 4e-22
Identities = 209/303 (69%), Gaps = 2/303 (1%)
Strand=Plus/Minus
Query 179920 TCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGC 179979
|||| || ||||| || ||||| || | || || |||| ||||| || || | |||
Sbjct 2040 TCACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGT 1981
Query 179980 TTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTA 180039
| ||||| || ||||| ||||| || || | | | |||||| || |||| |
Sbjct 1980 TACATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAG 1921
Query 180040 TTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCA--GAGCAGC 180097
| ||||| || | ||||| ||||| || || ||||| || || || | |||||
Sbjct 1920 TCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGC 1861
Query 180098 AGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACG 180157
|||||||| || |||||||| ||||||||||| || ||||| | |||||||| | ||
Sbjct 1860 CGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCG 1801
Query 180158 TGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCT 180217
||| ||| ||| | ||||| || ||||| | ||||||| || || |||||
Sbjct 1800 TGCTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCT 1741
Query 180218 GCC 180220
||
Sbjct 1740 ACC 1738
>seq15824
Length=139560
Score = 96.9 bits (106), Expect = 4e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 179565 CAATTTGAACTTGCTCGCCTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGT 179624
||||| ||||||||||| ||| | | ||||| ||||| || || || || ||
Sbjct 61331 CAATTCGAACTTGCTCGATCTATTTAATTGCGCCCTTATAATGCAATAGCATTCTCGGGC 61272
Query 179625 CCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTT 179684
|| |||||||| || || ||| ||||| || ||||| | | || || ||||||
Sbjct 61271 CCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGATCAATCTGGTTGGTTC 61212
Query 179685 TTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTC 179744
|| ||||| |||||||| || || || || | ||| | || || |||| || ||
Sbjct 61211 TTTGCGCCTAGTTTTGGTGTAGCAGCTATTTTTCGATTCATCCTATTTTTTCAAGGGTTT 61152
Query 179745 CACAACTGGACGCTCAACCCCTTCCATATGATGGGA 179780
|| || ||||||| ||| | || ||||||||||||
Sbjct 61151 CATAATTGGACGCAGAACTCTTTTCATATGATGGGA 61116
>seq12877
Length=40778
Score = 91.5 bits (100), Expect = 2e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 180053 CAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTT 180112
|| |||| |||| || || ||||| || || || | ||||| |||||||| || ||
Sbjct 742 CACCCTTAGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATT 801
Query 180113 TGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACC 180172
|||||| ||||||||||| || ||||| | |||||||| | ||||| ||| |||| |
Sbjct 802 TGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGC 861
Query 180173 AGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220
||||| || ||||| | ||||||| || || ||||| ||
Sbjct 862 TCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 909
>seq14024
Length=49420
Score = 86.0 bits (94), Expect = 8e-12
Identities = 225/337 (67%), Gaps = 11/337 (3%)
Strand=Plus/Plus
Query 179253 GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCC 179312
|||| || || ||||| |||| ||| || || | || |||| ||||||| ||||
Sbjct 34667 GATCATTTCGTTTTTGTAGGTTAGTCGGGTCTATTGCTCTTTCCTTGTGCTTATTTTGCT 34726
Query 179313 ATTGGCGGTTGGCTTACT-----GGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTC 179367
| || |||||| ||| | || || | ||||| || ||||| || || ||
Sbjct 34727 GTAGGGGGTTGGTTTAATTTACAGGTACGACGTTTGTAACTTCATGGTATACTCATGGGA 34786
Query 179368 TTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGC 179425
| || ||||| ||| | || || ||| | ||||||| | ||| | || || |||||
Sbjct 34787 TGGCCAGTTCATATTTGGAAGGCTGCAA--TTTCTTAACCGCAATCGATTCTACTCCTGC 34844
Query 179426 TGATGCTATGGGTCATTCTCTTCTTCTACTT-TGGGGTCCTGAGTCTCAGGGGAATTTCC 179484
| || | | | || ||| || || | || ||||||||||| | || || ||||
Sbjct 34845 TAATAGTTTAGCACACTCT-TTGTTGTTGTTGTGGGGTCCTGAAGCACAAGGCGATTTTA 34903
Query 179485 AGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTC 179544
|| ||| | ||| | || || | |||| ||| || ||||| || ||||| |||| |
Sbjct 34904 CTCGTTGGCGTCAATTAGGCGGCCAGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGGAC 34963
Query 179545 TCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG 179581
| || ||| | ||| | | ||||| ||||||||||
Sbjct 34964 TAATAGGTCTTATGTTACGCCAATTCAAACTTGCTCG 35000
>seq13902
Length=44788
Score = 86.0 bits (94), Expect = 8e-12
Identities = 186/268 (69%), Gaps = 9/268 (3%)
Strand=Plus/Minus
Query 179370 GCTAGTTCCTATCTTGA--GGGTGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCT 179426
|| ||||| ||| |||| || || ||| ||||||| | |||||||| || || ||||||
Sbjct 6347 GCCAGTTCATAT-TTGAAAGGCTG-TAA-TTTCTTAACCGCAGCTGTTTCCACTCCTGCT 6291
Query 179427 GATGCTATGGGTCATTCTCTTCTTCTA-CTTTGGGGTCCTGAGTCTCAGGGGAATTTCCA 179485
|| | | | || ||| || || | || ||| ||||||| | || || ||||
Sbjct 6290 AATAGTTTAGCACACTCTTTTGTTGTTTCTGTGGAGTCCTGAAGCACAAGGCGATTTTAC 6231
Query 179486 GCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCT 179545
|| ||||| ||| | || || | |||| ||| || | ||| || ||||| ||| ||
Sbjct 6230 TCGTTGGTGTCAATTAGGCGGCCCGTGGACTTTTGTTGATCTTCATGGTGCTTTCAGACT 6171
Query 179546 CATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGTATCAGACCTTACA 179604
|| ||||| ||| | | ||||| ||||||||||| ||| || | | ||||| |
Sbjct 6170 AATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTG-TTCAATTGCGCCCTTATA 6112
Query 179605 ATGCGATTGCTTTTTCTGGTCCTATTGC 179632
|||| || || || || || || |||||
Sbjct 6111 ATGCAATAGCATTCTCGGGCCCAATTGC 6084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605668052989440
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