Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq16048 132 7e-26 seq15946 129 8e-25 seq11586 129 8e-25 seq16162 95.1 2e-14 >seq16048 Length=246288 Score = 132 bits (146), Expect = 7e-26 Identities = 385/583 (66%), Gaps = 11/583 (2%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || || ||||| || || || ||||| || | | ||| | ||| || || || || | Sbjct 204513 CAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAAC 204454 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC-AGAAAAGAA 39735 || ||||| || ||||||||||| |||||||| || || ||| || ||| ||||||||| Sbjct 204453 CCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGAA 204395 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT-ATCATTATGTA 39794 || || || || ||||| || | || ||||| | ||| | | | | || | Sbjct 204394 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGC-AAACGTCTCAGAACCATCAA 204336 Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 |||| | |||||||| || |||||||| || ||| || || || | |||| || Sbjct 204335 TCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGAA 204276 Query 39855 AGAGATAATGTTTTTCATC-AC-TATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 | | || | |||| | || ||| | || ||| || || | || || ||||| Sbjct 204275 ACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACAT 204218 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || ||||| || || |||||||| |||||||| |||||||| | ||||| | | Sbjct 204217 CTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAG 204158 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 || | ||| || | ||| | || || || || |||||| ||||| Sbjct 204157 CTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGC 204098 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT---CCA 40089 ||| || || | || || | || |||| ||||||| ||||| | | ||| Sbjct 204097 AAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTCAAGGTCGTTGACCA 204038 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 || | | |||| ||| | ||| ||||||||||| ||||||||||| || || || || Sbjct 204037 GTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTT 203978 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 |||||||| | ||| || | | || || ||||| || ||| Sbjct 203977 CTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 203935 >seq15946 Length=172941 Score = 129 bits (142), Expect = 8e-25 Identities = 384/583 (66%), Gaps = 11/583 (2%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || || ||||| || || || ||||| || | | ||| | ||| || || || || | Sbjct 58578 CAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAAC 58519 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC-AGAAAAGAA 39735 || ||||| || ||||||||||| |||||||| || || ||| || ||| ||||||||| Sbjct 58518 CCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGAA 58460 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT-ATCATTATGTA 39794 || || || || ||||| || | || ||||| | ||| | | | | || | Sbjct 58459 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGC-AAACGTCTCAGAACCATCAA 58401 Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 |||| | |||||||| || |||||||| || ||| || || || | |||| || Sbjct 58400 TCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGAA 58341 Query 39855 AGAGATAATGTTTTTCATC-AC-TATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 | | || | |||| | || ||| | || ||| || || | || || ||||| Sbjct 58340 ACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACAT 58283 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || ||||| || || |||||||| |||||||| |||||||| | ||||| | | Sbjct 58282 CTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAG 58223 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 || | ||| || | ||| | || || || || |||||| ||||| Sbjct 58222 CTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGC 58163 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT---CCA 40089 ||| || || | || || | || |||| ||||| | ||||| | | ||| Sbjct 58162 AAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCA 58103 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 || | | |||| ||| | ||| ||||||||||| ||||||||||| || || || || Sbjct 58102 GTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTT 58043 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 |||||||| | ||| || | | || || ||||| || ||| Sbjct 58042 CTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 58000 >seq11586 Length=26096 Score = 129 bits (142), Expect = 8e-25 Identities = 384/583 (66%), Gaps = 11/583 (2%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || || ||||| || || || ||||| || | | ||| | ||| || || || || | Sbjct 4336 CAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAAC 4277 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC-AGAAAAGAA 39735 || ||||| || ||||||||||| |||||||| || || ||| || ||| ||||||||| Sbjct 4276 CCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGAA 4218 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT-ATCATTATGTA 39794 || || || || ||||| || | || ||||| | ||| | | | | || | Sbjct 4217 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGC-AAACGTCTCAGAACCATCAA 4159 Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 |||| | |||||||| || |||||||| || ||| || || || | |||| || Sbjct 4158 TCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGAA 4099 Query 39855 AGAGATAATGTTTTTCATC-AC-TATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 | | || | |||| | || ||| | || ||| || || | || || ||||| Sbjct 4098 ACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACAT 4041 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || ||||| || || |||||||| |||||||| |||||||| | ||||| | | Sbjct 4040 CTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAG 3981 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 || | ||| || | ||| | || || || || |||||| ||||| Sbjct 3980 CTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGC 3921 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT---CCA 40089 ||| || || | || || | || |||| ||||| | ||||| | | ||| Sbjct 3920 AAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCA 3861 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 || | | |||| ||| | ||| ||||||||||| ||||||||||| || || || || Sbjct 3860 GTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTT 3801 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 |||||||| | ||| || | | || || ||||| || ||| Sbjct 3800 CTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 3758 >seq16162 Length=245457 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || || || || ||||||||||| | | ||| | | || | Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| || || || || ||||| || ||| || || | || || | ||||||| Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||||||||| | || || || | | | |||||||| || ||| | || || Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || |||||||| | || |||||| | |||||||| || Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686521658200320