Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 132 7e-26
seq15946 129 8e-25
seq11586 129 8e-25
seq16162 95.1 2e-14
>seq16048
Length=246288
Score = 132 bits (146), Expect = 7e-26
Identities = 385/583 (66%), Gaps = 11/583 (2%)
Strand=Plus/Minus
Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676
|| || ||||| || || || ||||| || | | ||| | ||| || || || || |
Sbjct 204513 CAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAAC 204454
Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC-AGAAAAGAA 39735
|| ||||| || ||||||||||| |||||||| || || ||| || ||| |||||||||
Sbjct 204453 CCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGAA 204395
Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT-ATCATTATGTA 39794
|| || || || ||||| || | || ||||| | ||| | | | | || |
Sbjct 204394 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGC-AAACGTCTCAGAACCATCAA 204336
Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854
|||| | |||||||| || |||||||| || ||| || || || | |||| ||
Sbjct 204335 TCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGAA 204276
Query 39855 AGAGATAATGTTTTTCATC-AC-TATCTTTAACATATGTATCTATTAACAGACTATACAT 39912
| | || | |||| | || ||| | || ||| || || | || || |||||
Sbjct 204275 ACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACAT 204218
Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972
|| ||||| || || |||||||| |||||||| |||||||| | ||||| | |
Sbjct 204217 CTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAG 204158
Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032
|| | ||| || | ||| | || || || || |||||| |||||
Sbjct 204157 CTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGC 204098
Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT---CCA 40089
||| || || | || || | || |||| ||||||| ||||| | | |||
Sbjct 204097 AAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTCAAGGTCGTTGACCA 204038
Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149
|| | | |||| ||| | ||| ||||||||||| ||||||||||| || || || ||
Sbjct 204037 GTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTT 203978
Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192
|||||||| | ||| || | | || || ||||| || |||
Sbjct 203977 CTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 203935
>seq15946
Length=172941
Score = 129 bits (142), Expect = 8e-25
Identities = 384/583 (66%), Gaps = 11/583 (2%)
Strand=Plus/Minus
Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676
|| || ||||| || || || ||||| || | | ||| | ||| || || || || |
Sbjct 58578 CAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAAC 58519
Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC-AGAAAAGAA 39735
|| ||||| || ||||||||||| |||||||| || || ||| || ||| |||||||||
Sbjct 58518 CCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGAA 58460
Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT-ATCATTATGTA 39794
|| || || || ||||| || | || ||||| | ||| | | | | || |
Sbjct 58459 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGC-AAACGTCTCAGAACCATCAA 58401
Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854
|||| | |||||||| || |||||||| || ||| || || || | |||| ||
Sbjct 58400 TCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGAA 58341
Query 39855 AGAGATAATGTTTTTCATC-AC-TATCTTTAACATATGTATCTATTAACAGACTATACAT 39912
| | || | |||| | || ||| | || ||| || || | || || |||||
Sbjct 58340 ACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACAT 58283
Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972
|| ||||| || || |||||||| |||||||| |||||||| | ||||| | |
Sbjct 58282 CTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAG 58223
Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032
|| | ||| || | ||| | || || || || |||||| |||||
Sbjct 58222 CTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGC 58163
Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT---CCA 40089
||| || || | || || | || |||| ||||| | ||||| | | |||
Sbjct 58162 AAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCA 58103
Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149
|| | | |||| ||| | ||| ||||||||||| ||||||||||| || || || ||
Sbjct 58102 GTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTT 58043
Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192
|||||||| | ||| || | | || || ||||| || |||
Sbjct 58042 CTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 58000
>seq11586
Length=26096
Score = 129 bits (142), Expect = 8e-25
Identities = 384/583 (66%), Gaps = 11/583 (2%)
Strand=Plus/Minus
Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676
|| || ||||| || || || ||||| || | | ||| | ||| || || || || |
Sbjct 4336 CAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAAC 4277
Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC-AGAAAAGAA 39735
|| ||||| || ||||||||||| |||||||| || || ||| || ||| |||||||||
Sbjct 4276 CCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGAA 4218
Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT-ATCATTATGTA 39794
|| || || || ||||| || | || ||||| | ||| | | | | || |
Sbjct 4217 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGC-AAACGTCTCAGAACCATCAA 4159
Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854
|||| | |||||||| || |||||||| || ||| || || || | |||| ||
Sbjct 4158 TCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGAA 4099
Query 39855 AGAGATAATGTTTTTCATC-AC-TATCTTTAACATATGTATCTATTAACAGACTATACAT 39912
| | || | |||| | || ||| | || ||| || || | || || |||||
Sbjct 4098 ACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACAT 4041
Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972
|| ||||| || || |||||||| |||||||| |||||||| | ||||| | |
Sbjct 4040 CTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAG 3981
Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032
|| | ||| || | ||| | || || || || |||||| |||||
Sbjct 3980 CTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGC 3921
Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT---CCA 40089
||| || || | || || | || |||| ||||| | ||||| | | |||
Sbjct 3920 AAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCA 3861
Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149
|| | | |||| ||| | ||| ||||||||||| ||||||||||| || || || ||
Sbjct 3860 GTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTT 3801
Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192
|||||||| | ||| || | | || || ||||| || |||
Sbjct 3800 CTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 3758
>seq16162
Length=245457
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || ||||| || | || || || || ||||||||||| | | ||| | | || |
Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
||||||| || || || || ||||| || ||| || || | || || | |||||||
Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813
Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170
||||||||||| | || || || | | | |||||||| || ||| | || ||
Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753
Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| || |||||||| | || |||||| | |||||||| ||
Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686521658200320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |