Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_027335.1 Length=145518 Score E Sequences producing significant alignments: (Bits) Value seq16093 89.7 5e-13 seq4271 89.7 5e-13 >seq16093 Length=196541 Score = 89.7 bits (98), Expect = 5e-13 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 102458 AACTAATTATATTAAGGACGTTTAGCTCAGTTGGTCAGAGCATTCGGCTCATAAC-CGAA 102516 ||||||| ||||||||| | |||||||||||||| ||||| | ||| ||||| |||| Sbjct 126135 AACTAATAATATTAAGGCCTATTAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAA 126194 Query 102517 CGGTCGCAGGTTCGAGACCTGCA 102539 |||||||||||||||||||||| Sbjct 126195 -GGTCGCAGGTTCGAGACCTGCA 126216 >seq4271 Length=7765 Score = 89.7 bits (98), Expect = 5e-13 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 102458 AACTAATTATATTAAGGACGTTTAGCTCAGTTGGTCAGAGCATTCGGCTCATAAC-CGAA 102516 ||||||| ||||||||| | |||||||||||||| ||||| | ||| ||||| |||| Sbjct 5330 AACTAATAATATTAAGGCCTATTAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAA 5389 Query 102517 CGGTCGCAGGTTCGAGACCTGCA 102539 |||||||||||||||||||||| Sbjct 5390 -GGTCGCAGGTTCGAGACCTGCA 5411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465267227517440