Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq15946 143 2e-29 seq11586 143 2e-29 seq16048 140 3e-28 >seq15946 Length=172941 Score = 143 bits (158), Expect = 2e-29 Identities = 384/580 (66%), Gaps = 9/580 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||||| || | | || ||| |||||||||| ||||| | || || |||| Sbjct 58002 TGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAAGCATCGTTTT 58061 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG--ATTGCATTAAAACC 43824 |||| || |||||||| ||| | | |||||||| || ||| | | | | | Sbjct 58062 GGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGTCACTGGTCAACGACCTTGACCG 58121 Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 |||| ||| ||||| || || ||| | || || ||||| || || ||||| | Sbjct 58122 ACAATGAACGCCATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCATCTGATGGGATTG 58181 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 | || || | | ||||||| | | || |||| | || ||||| || | Sbjct 58182 TTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGATTCAGCTCCCCGAAGCGCGTGCGT 58241 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 |||| |||||||| ||||| || || |||||||||||||| |||||| ||| || | | Sbjct 58242 TTTACGGGTTTCAGATTGCGATTGAGAATATTCATTCGGAGATGTACTCGCTTTTGCTTG 58301 Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGCATCGA--TTGTTTAATGCGATAGAAACAGT 44061 | ||||| || | ||| | |||| |||| |||||| ||| | || || | Sbjct 58302 AGACGTATATTCAGGATTCGTCGTTGAAG--TCGAATTTGTTTCGTGCTGTCGAGACGAT 58359 Query 44062 ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 |||||| | || | || || || ||||| | ||||| || ||| | || Sbjct 58360 TCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACGTT 58419 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC-AGGATCGTTTG 44180 || || | || |||| ||||| ||| || || || |||||||| ||| | || Sbjct 58420 TGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTG 58479 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 | || || |||||| | || || || || | ||||| ||||| || || |||||||| Sbjct 58480 C-GCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAAC 58538 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | || |||||| || || | || ||||| |||||||| Sbjct 58539 TCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGCTTG 58578 >seq11586 Length=26096 Score = 143 bits (158), Expect = 2e-29 Identities = 384/580 (66%), Gaps = 9/580 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||||| || | | || ||| |||||||||| ||||| | || || |||| Sbjct 3760 TGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAAGCATCGTTTT 3819 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG--ATTGCATTAAAACC 43824 |||| || |||||||| ||| | | |||||||| || ||| | | | | | Sbjct 3820 GGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGTCACTGGTCAACGACCTTGACCG 3879 Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 |||| ||| ||||| || || ||| | || || ||||| || || ||||| | Sbjct 3880 ACAATGAACGCCATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCATCTGATGGGATTG 3939 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 | || || | | ||||||| | | || |||| | || ||||| || | Sbjct 3940 TTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGATTCAGCTCCCCGAAGCGCGTGCGT 3999 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 |||| |||||||| ||||| || || |||||||||||||| |||||| ||| || | | Sbjct 4000 TTTACGGGTTTCAGATTGCGATTGAGAATATTCATTCGGAGATGTACTCGCTTTTGCTTG 4059 Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGCATCGA--TTGTTTAATGCGATAGAAACAGT 44061 | ||||| || | ||| | |||| |||| |||||| ||| | || || | Sbjct 4060 AGACGTATATTCAGGATTCGTCGTTGAAG--TCGAATTTGTTTCGTGCTGTCGAGACGAT 4117 Query 44062 ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 |||||| | || | || || || ||||| | ||||| || ||| | || Sbjct 4118 TCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACGTT 4177 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC-AGGATCGTTTG 44180 || || | || |||| ||||| ||| || || || |||||||| ||| | || Sbjct 4178 TGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTG 4237 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 | || || |||||| | || || || || | ||||| ||||| || || |||||||| Sbjct 4238 C-GCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAAC 4296 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | || |||||| || || | || ||||| |||||||| Sbjct 4297 TCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGCTTG 4336 >seq16048 Length=246288 Score = 140 bits (154), Expect = 3e-28 Identities = 383/580 (66%), Gaps = 9/580 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||||| || | | || ||| |||||||||| ||||| | || || |||| Sbjct 203937 TGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAAGCATCGTTTT 203996 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG--ATTGCATTAAAACC 43824 |||| || |||||||| ||| | | |||||||| || ||| | | | | | Sbjct 203997 GGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGTCACTGGTCAACGACCTTGACCG 204056 Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 || | ||| ||||| || || ||| | || || ||||| || || ||||| | Sbjct 204057 ACGATGAACGCCATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCATCTGATGGGATTG 204116 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 | || || | | ||||||| | | || |||| | || ||||| || | Sbjct 204117 TTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGATTCAGCTCCCCGAAGCGCGTGCGT 204176 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 |||| |||||||| ||||| || || |||||||||||||| |||||| ||| || | | Sbjct 204177 TTTACGGGTTTCAGATTGCGATTGAGAATATTCATTCGGAGATGTACTCGCTTTTGCTTG 204236 Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGCATCGA--TTGTTTAATGCGATAGAAACAGT 44061 | ||||| || | ||| | |||| |||| |||||| ||| | || || | Sbjct 204237 AGACGTATATTCAGGATTCGTCGTTGAAG--TCGAATTTGTTTCGTGCTGTCGAGACGAT 204294 Query 44062 ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 |||||| | || | || || || ||||| | ||||| || ||| | || Sbjct 204295 TCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACGTT 204354 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC-AGGATCGTTTG 44180 || || | || |||| ||||| ||| || || || |||||||| ||| | || Sbjct 204355 TGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTG 204414 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 | || || |||||| | || || || || | ||||| ||||| || || |||||||| Sbjct 204415 C-GCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAAC 204473 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | || |||||| || || | || ||||| |||||||| Sbjct 204474 TCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGCTTG 204513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397237593953440