Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq15946 143 2e-29
seq11586 143 2e-29
seq16048 140 3e-28
>seq15946
Length=172941
Score = 143 bits (158), Expect = 2e-29
Identities = 384/580 (66%), Gaps = 9/580 (2%)
Strand=Plus/Plus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
|||| |||||||| || | | || ||| |||||||||| ||||| | || || ||||
Sbjct 58002 TGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAAGCATCGTTTT 58061
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG--ATTGCATTAAAACC 43824
|||| || |||||||| ||| | | |||||||| || ||| | | | | |
Sbjct 58062 GGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGTCACTGGTCAACGACCTTGACCG 58121
Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883
|||| ||| ||||| || || ||| | || || ||||| || || ||||| |
Sbjct 58122 ACAATGAACGCCATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCATCTGATGGGATTG 58181
Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943
| || || | | ||||||| | | || |||| | || ||||| || |
Sbjct 58182 TTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGATTCAGCTCCCCGAAGCGCGTGCGT 58241
Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003
|||| |||||||| ||||| || || |||||||||||||| |||||| ||| || | |
Sbjct 58242 TTTACGGGTTTCAGATTGCGATTGAGAATATTCATTCGGAGATGTACTCGCTTTTGCTTG 58301
Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGCATCGA--TTGTTTAATGCGATAGAAACAGT 44061
| ||||| || | ||| | |||| |||| |||||| ||| | || || |
Sbjct 58302 AGACGTATATTCAGGATTCGTCGTTGAAG--TCGAATTTGTTTCGTGCTGTCGAGACGAT 58359
Query 44062 ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121
|||||| | || | || || || ||||| | ||||| || ||| | ||
Sbjct 58360 TCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACGTT 58419
Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC-AGGATCGTTTG 44180
|| || | || |||| ||||| ||| || || || |||||||| ||| | ||
Sbjct 58420 TGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTG 58479
Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240
| || || |||||| | || || || || | ||||| ||||| || || ||||||||
Sbjct 58480 C-GCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAAC 58538
Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280
| || |||||| || || | || ||||| ||||||||
Sbjct 58539 TCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGCTTG 58578
>seq11586
Length=26096
Score = 143 bits (158), Expect = 2e-29
Identities = 384/580 (66%), Gaps = 9/580 (2%)
Strand=Plus/Plus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
|||| |||||||| || | | || ||| |||||||||| ||||| | || || ||||
Sbjct 3760 TGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAAGCATCGTTTT 3819
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG--ATTGCATTAAAACC 43824
|||| || |||||||| ||| | | |||||||| || ||| | | | | |
Sbjct 3820 GGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGTCACTGGTCAACGACCTTGACCG 3879
Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883
|||| ||| ||||| || || ||| | || || ||||| || || ||||| |
Sbjct 3880 ACAATGAACGCCATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCATCTGATGGGATTG 3939
Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943
| || || | | ||||||| | | || |||| | || ||||| || |
Sbjct 3940 TTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGATTCAGCTCCCCGAAGCGCGTGCGT 3999
Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003
|||| |||||||| ||||| || || |||||||||||||| |||||| ||| || | |
Sbjct 4000 TTTACGGGTTTCAGATTGCGATTGAGAATATTCATTCGGAGATGTACTCGCTTTTGCTTG 4059
Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGCATCGA--TTGTTTAATGCGATAGAAACAGT 44061
| ||||| || | ||| | |||| |||| |||||| ||| | || || |
Sbjct 4060 AGACGTATATTCAGGATTCGTCGTTGAAG--TCGAATTTGTTTCGTGCTGTCGAGACGAT 4117
Query 44062 ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121
|||||| | || | || || || ||||| | ||||| || ||| | ||
Sbjct 4118 TCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACGTT 4177
Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC-AGGATCGTTTG 44180
|| || | || |||| ||||| ||| || || || |||||||| ||| | ||
Sbjct 4178 TGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTG 4237
Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240
| || || |||||| | || || || || | ||||| ||||| || || ||||||||
Sbjct 4238 C-GCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAAC 4296
Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280
| || |||||| || || | || ||||| ||||||||
Sbjct 4297 TCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGCTTG 4336
>seq16048
Length=246288
Score = 140 bits (154), Expect = 3e-28
Identities = 383/580 (66%), Gaps = 9/580 (2%)
Strand=Plus/Plus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
|||| |||||||| || | | || ||| |||||||||| ||||| | || || ||||
Sbjct 203937 TGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAAGCATCGTTTT 203996
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG--ATTGCATTAAAACC 43824
|||| || |||||||| ||| | | |||||||| || ||| | | | | |
Sbjct 203997 GGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGTCACTGGTCAACGACCTTGACCG 204056
Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883
|| | ||| ||||| || || ||| | || || ||||| || || ||||| |
Sbjct 204057 ACGATGAACGCCATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCATCTGATGGGATTG 204116
Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943
| || || | | ||||||| | | || |||| | || ||||| || |
Sbjct 204117 TTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGATTCAGCTCCCCGAAGCGCGTGCGT 204176
Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003
|||| |||||||| ||||| || || |||||||||||||| |||||| ||| || | |
Sbjct 204177 TTTACGGGTTTCAGATTGCGATTGAGAATATTCATTCGGAGATGTACTCGCTTTTGCTTG 204236
Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGCATCGA--TTGTTTAATGCGATAGAAACAGT 44061
| ||||| || | ||| | |||| |||| |||||| ||| | || || |
Sbjct 204237 AGACGTATATTCAGGATTCGTCGTTGAAG--TCGAATTTGTTTCGTGCTGTCGAGACGAT 204294
Query 44062 ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121
|||||| | || | || || || ||||| | ||||| || ||| | ||
Sbjct 204295 TCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACGTT 204354
Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC-AGGATCGTTTG 44180
|| || | || |||| ||||| ||| || || || |||||||| ||| | ||
Sbjct 204355 TGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTG 204414
Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240
| || || |||||| | || || || || | ||||| ||||| || || ||||||||
Sbjct 204415 C-GCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAAC 204473
Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280
| || |||||| || || | || ||||| ||||||||
Sbjct 204474 TCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGCTTG 204513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397237593953440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |