Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq13658 123 3e-23
seq13599 123 3e-23
seq15946 118 1e-21
seq11586 118 1e-21
seq16048 116 5e-21
seq16162 96.9 4e-15
seq13639 82.4 1e-10
>seq13658
Length=94377
Score = 123 bits (136), Expect = 3e-23
Identities = 249/368 (68%), Gaps = 6/368 (2%)
Strand=Plus/Plus
Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509
|| ||||||||||| || | | || || |||||| || || | | ||||| ||
Sbjct 62779 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 62838
Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569
|| | || | || || || | ||||| || |||||||| ||||| | |||||
Sbjct 62839 GCGACTACAATAACACCGGTGTTGCCCTCAAAACCGTCCATCTCAGTGAGAAGCTGATTC 62898
Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626
| || ||||| ||||| ||||| || |||| |||| || | || | ||
Sbjct 62899 AGCGTCTGTTCCCTCTCGTCATTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 62955
Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686
|| |||||||| ||||||| |||||||| || || |||||| || ||| ||
Sbjct 62956 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 63015
Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746
||||| || || | ||||||||||||||||||||||| ||||| | | ||||
Sbjct 63016 AGATCACGCACTCGAGAAGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 63075
Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806
| || ||| || ||| || ||| || || ||||| || ||||||||||||||
Sbjct 63076 ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCCA 63135
Query 11807 GTACCTGG 11814
|| |||||
Sbjct 63136 GTCCCTGG 63143
>seq13599
Length=79719
Score = 123 bits (136), Expect = 3e-23
Identities = 249/368 (68%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509
|| ||||||||||| || | | || || |||||| || || | | ||||| ||
Sbjct 37288 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 37229
Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569
|| | || | || || || | ||||| || |||||||| ||||| | |||||
Sbjct 37228 GCGACTACAATAACACCGGTGTTGCCCTCAAACCCGTCCATCTCAGTGAGAAGCTGATTC 37169
Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626
| || ||||| ||||| || || || |||| |||| || | || | ||
Sbjct 37168 AGCGTCTGTTCCCTCTCGTCGTTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 37112
Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686
|| |||||||| ||||||| |||||||| || || |||||| || ||| ||
Sbjct 37111 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 37052
Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746
||||| || || | |||||||||||||||||||||||| ||||| | | ||||
Sbjct 37051 AGATCACGCACTCGAGAGGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 36992
Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806
| || ||| || ||| || ||| || || ||||| || ||||||||||||||
Sbjct 36991 ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCCA 36932
Query 11807 GTACCTGG 11814
|| |||||
Sbjct 36931 GTCCCTGG 36924
>seq15946
Length=172941
Score = 118 bits (130), Expect = 1e-21
Identities = 375/569 (66%), Gaps = 18/569 (3%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| |||||||| || || ||||| ||||||||||||||| || ||
Sbjct 58575 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 58516
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
||||| || || ||||| || | |||| |||| |||||||| ||| || ||||| ||
Sbjct 58515 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 58456
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838
||||| ||||||||||| || | || | || || || | ||| |||||| |
Sbjct 58455 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTCAGA---ACCATCAATC 58399
Query 122839 CATTTCATTGCCCATTTCGCCTTCTTC-TCAATACATGGTACAGTTTGGATGGCTTCAAA 122897
|| || ||||| | |||||||||| ||| || || | || | || || |||
Sbjct 58398 CAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTCGACAGCACGAAA 58340
Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957
|| | | ||| || ||||| ||| || | |||| ||| || || | ||
Sbjct 58339 CAAATTCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACATCTC 58280
Query 122958 GCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015
||||| | ||| || ||| ||| | |||| || | ||||||||| | |
Sbjct 58279 CGAATGAATATTCTCA--ATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAGC 58222
Query 123016 TGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 123075
|||| ||| | | || || ||||| | |||||| ||||| || | |||
Sbjct 58221 TGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGCA 58162
Query 123076 AAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTT---CCAG 123132
||||| || || | || | ||||| | |||||| || ||| |||| | ||||
Sbjct 58161 AAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCAG 58102
Query 123133 T--CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCC-AATTGCTCATTTGAGCC 123189
| ||| ||| |||| || | ||| |||||||| || |||| || | | || | ||
Sbjct 58101 TGACGT-AAG-TCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCG-GCT 58045
Query 123190 TTTTTATAGAGTTCCCAGAGTTGTGGATA 123218
|| || || | |||||||| ||| || ||
Sbjct 58044 TTCTTGTACATTTCCCAGATTTGCGGGTA 58016
>seq11586
Length=26096
Score = 118 bits (130), Expect = 1e-21
Identities = 375/569 (66%), Gaps = 18/569 (3%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| |||||||| || || ||||| ||||||||||||||| || ||
Sbjct 4333 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 4274
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
||||| || || ||||| || | |||| |||| |||||||| ||| || ||||| ||
Sbjct 4273 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 4214
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838
||||| ||||||||||| || | || | || || || | ||| |||||| |
Sbjct 4213 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTCAGA---ACCATCAATC 4157
Query 122839 CATTTCATTGCCCATTTCGCCTTCTTC-TCAATACATGGTACAGTTTGGATGGCTTCAAA 122897
|| || ||||| | |||||||||| ||| || || | || | || || |||
Sbjct 4156 CAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTCGACAGCACGAAA 4098
Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957
|| | | ||| || ||||| ||| || | |||| ||| || || | ||
Sbjct 4097 CAAATTCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACATCTC 4038
Query 122958 GCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015
||||| | ||| || ||| ||| | |||| || | ||||||||| | |
Sbjct 4037 CGAATGAATATTCTCA--ATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAGC 3980
Query 123016 TGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 123075
|||| ||| | | || || ||||| | |||||| ||||| || | |||
Sbjct 3979 TGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGCA 3920
Query 123076 AAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTT---CCAG 123132
||||| || || | || | ||||| | |||||| || ||| |||| | ||||
Sbjct 3919 AAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCAG 3860
Query 123133 T--CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCC-AATTGCTCATTTGAGCC 123189
| ||| ||| |||| || | ||| |||||||| || |||| || | | || | ||
Sbjct 3859 TGACGT-AAG-TCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCG-GCT 3803
Query 123190 TTTTTATAGAGTTCCCAGAGTTGTGGATA 123218
|| || || | |||||||| ||| || ||
Sbjct 3802 TTCTTGTACATTTCCCAGATTTGCGGGTA 3774
>seq16048
Length=246288
Score = 116 bits (128), Expect = 5e-21
Identities = 151/208 (73%), Gaps = 3/208 (1%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| |||||||| || || ||||| ||||||||||||||| || ||
Sbjct 204510 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 204451
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
||||| || || ||||| || | |||| |||| |||||||| ||| || ||||| ||
Sbjct 204450 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 204391
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838
||||| ||||||||||| || | || | || || || | ||| |||||| |
Sbjct 204390 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTCAGA---ACCATCAATC 204334
Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCT 122866
|| || ||||| | |||||||||||
Sbjct 204333 CAACGCAACGCCCAATCCGCCTTCTTCT 204306
>seq16162
Length=245457
Score = 96.9 bits (106), Expect = 4e-15
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999
|| ||||| ||||| ||||||||||||||||| || | || ||| ||||| |||| ||
Sbjct 40944 TGAGGTCTCGGTGTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAAC-CACCTCTG 40886
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
||||| | |||||| | | |||| ||||| || ||| ||||| |||| |||
Sbjct 40885 AGACATGAAATGGTATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGC 40826
Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118
|| | ||| ||||| | ||| || | |||| | | ||| | | || | | ||||
Sbjct 40825 AACTCTCATCAACATATGCTGAGGCCTCTCCACAACCTTTCCA-CTAACCTTCAACAGAT 40767
Query 112119 A-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167
| | || |||| |||||||||| |||||| ||| || | ||| |||| ||
Sbjct 40766 ACGATC-TCTCGAGGGTTTTGAAACCAAAATAATCATAGTCAAAGTCACG 40718
Score = 89.7 bits (98), Expect = 6e-13
Identities = 110/148 (74%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 111460 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTG 111518
|||||| || ||||| || |||||||||| | |||| | || ||| | |||||||| |
Sbjct 41742 CTCGTAATTAGTGTAAAGCACTTCAAACTCTTTACCC-CAGCAGTCTGCAAGACCTGGGG 41684
Query 111519 CCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGT 111578
||| || ||||| || | |||||||||||| | | | ||||| || |||||| || |
Sbjct 41683 CCTCGTTAGGACAAAACAAGGACCATTGACCATCATTTTGAACCCTCTCCATGAACAGAT 41624
Query 111579 CTGGAATCCACAGGGATGAAAAGAGATC 111606
| || | ||| || | ||||||||||
Sbjct 41623 CAGGCACCCAAAGAGCAAAAAAGAGATC 41596
>seq13639
Length=40771
Score = 82.4 bits (90), Expect = 1e-10
Identities = 211/317 (67%), Gaps = 6/317 (2%)
Strand=Plus/Plus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|||||||||||||| || | || |||||||| || || |||||||| || || | ||
Sbjct 21558 AAGCCATCCATCTCAGTCAACAACTGATTAATGGTCTGCTCTCTCTCGTCGTT--CCCGC 21615
Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657
||| ||||| | | ||| | || || |||||||| || ||||| || || || |
Sbjct 21616 CACCCATTCCAGCTCCTCTTTGTCTACCGACTGCATCAATTTCGTCAATAAACACGATGC 21675
Query 11658 ATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716
| || || || | | || | ||||| | || | || || | || || || |||
Sbjct 21676 ACGG-TGCCTTACTCTTTGCTTTCTCAAACAAGTCCCTCACTCTGCTCGCCCCAACCCCA 21734
Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776
|| |||| ||| ||||| | | || | |||| || ||| || ||| | || ||
Sbjct 21735 ACGAACAACTCTACAAATTCAGAAGCTGCGCACGAGAAGAACGGCACACCAGCCTCTCCT 21794
Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836
|| | |||| || || || ||||| || |||||||| |||| | | ||| |||
Sbjct 21795 GCCACTGCTCTTGCCAGCAGTGTCTTACCGGTACCTGGAGGACCCACTAACAGGCACCCT 21854
Query 11837 CGGGGGATCTTGGCACC 11853
|| ||||| |||||
Sbjct 21855 TTCGGAATCTTTGCACC 21871
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627678041164800
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