Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq13658 123 3e-23 seq13599 123 3e-23 seq15946 118 1e-21 seq11586 118 1e-21 seq16048 116 5e-21 seq16162 96.9 4e-15 seq13639 82.4 1e-10 >seq13658 Length=94377 Score = 123 bits (136), Expect = 3e-23 Identities = 249/368 (68%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||||||||| || | | || || |||||| || || | | ||||| || Sbjct 62779 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 62838 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 || | || | || || || | ||||| || |||||||| ||||| | ||||| Sbjct 62839 GCGACTACAATAACACCGGTGTTGCCCTCAAAACCGTCCATCTCAGTGAGAAGCTGATTC 62898 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || ||||| ||||| ||||| || |||| |||| || | || | || Sbjct 62899 AGCGTCTGTTCCCTCTCGTCATTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 62955 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| |||||||| || || |||||| || ||| || Sbjct 62956 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 63015 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || || | ||||||||||||||||||||||| ||||| | | |||| Sbjct 63016 AGATCACGCACTCGAGAAGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 63075 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 | || ||| || ||| || ||| || || ||||| || |||||||||||||| Sbjct 63076 ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCCA 63135 Query 11807 GTACCTGG 11814 || ||||| Sbjct 63136 GTCCCTGG 63143 >seq13599 Length=79719 Score = 123 bits (136), Expect = 3e-23 Identities = 249/368 (68%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||||||||| || | | || || |||||| || || | | ||||| || Sbjct 37288 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 37229 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 || | || | || || || | ||||| || |||||||| ||||| | ||||| Sbjct 37228 GCGACTACAATAACACCGGTGTTGCCCTCAAACCCGTCCATCTCAGTGAGAAGCTGATTC 37169 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || ||||| ||||| || || || |||| |||| || | || | || Sbjct 37168 AGCGTCTGTTCCCTCTCGTCGTTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 37112 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| |||||||| || || |||||| || ||| || Sbjct 37111 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 37052 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || || | |||||||||||||||||||||||| ||||| | | |||| Sbjct 37051 AGATCACGCACTCGAGAGGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 36992 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 | || ||| || ||| || ||| || || ||||| || |||||||||||||| Sbjct 36991 ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCCA 36932 Query 11807 GTACCTGG 11814 || ||||| Sbjct 36931 GTCCCTGG 36924 >seq15946 Length=172941 Score = 118 bits (130), Expect = 1e-21 Identities = 375/569 (66%), Gaps = 18/569 (3%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| || || ||||| ||||||||||||||| || || Sbjct 58575 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 58516 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || ||||| || | |||| |||| |||||||| ||| || ||||| || Sbjct 58515 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 58456 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 ||||| ||||||||||| || | || | || || || | ||| |||||| | Sbjct 58455 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTCAGA---ACCATCAATC 58399 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTC-TCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 || || ||||| | |||||||||| ||| || || | || | || || ||| Sbjct 58398 CAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTCGACAGCACGAAA 58340 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957 || | | ||| || ||||| ||| || | |||| ||| || || | || Sbjct 58339 CAAATTCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACATCTC 58280 Query 122958 GCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015 ||||| | ||| || ||| ||| | |||| || | ||||||||| | | Sbjct 58279 CGAATGAATATTCTCA--ATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAGC 58222 Query 123016 TGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 123075 |||| ||| | | || || ||||| | |||||| ||||| || | ||| Sbjct 58221 TGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGCA 58162 Query 123076 AAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTT---CCAG 123132 ||||| || || | || | ||||| | |||||| || ||| |||| | |||| Sbjct 58161 AAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCAG 58102 Query 123133 T--CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCC-AATTGCTCATTTGAGCC 123189 | ||| ||| |||| || | ||| |||||||| || |||| || | | || | || Sbjct 58101 TGACGT-AAG-TCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCG-GCT 58045 Query 123190 TTTTTATAGAGTTCCCAGAGTTGTGGATA 123218 || || || | |||||||| ||| || || Sbjct 58044 TTCTTGTACATTTCCCAGATTTGCGGGTA 58016 >seq11586 Length=26096 Score = 118 bits (130), Expect = 1e-21 Identities = 375/569 (66%), Gaps = 18/569 (3%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| || || ||||| ||||||||||||||| || || Sbjct 4333 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 4274 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || ||||| || | |||| |||| |||||||| ||| || ||||| || Sbjct 4273 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 4214 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 ||||| ||||||||||| || | || | || || || | ||| |||||| | Sbjct 4213 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTCAGA---ACCATCAATC 4157 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTC-TCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 || || ||||| | |||||||||| ||| || || | || | || || ||| Sbjct 4156 CAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTCGACAGCACGAAA 4098 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957 || | | ||| || ||||| ||| || | |||| ||| || || | || Sbjct 4097 CAAATTCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACATCTC 4038 Query 122958 GCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015 ||||| | ||| || ||| ||| | |||| || | ||||||||| | | Sbjct 4037 CGAATGAATATTCTCA--ATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAGC 3980 Query 123016 TGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 123075 |||| ||| | | || || ||||| | |||||| ||||| || | ||| Sbjct 3979 TGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGCA 3920 Query 123076 AAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTT---CCAG 123132 ||||| || || | || | ||||| | |||||| || ||| |||| | |||| Sbjct 3919 AAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCAG 3860 Query 123133 T--CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCC-AATTGCTCATTTGAGCC 123189 | ||| ||| |||| || | ||| |||||||| || |||| || | | || | || Sbjct 3859 TGACGT-AAG-TCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCG-GCT 3803 Query 123190 TTTTTATAGAGTTCCCAGAGTTGTGGATA 123218 || || || | |||||||| ||| || || Sbjct 3802 TTCTTGTACATTTCCCAGATTTGCGGGTA 3774 >seq16048 Length=246288 Score = 116 bits (128), Expect = 5e-21 Identities = 151/208 (73%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| || || ||||| ||||||||||||||| || || Sbjct 204510 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 204451 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || ||||| || | |||| |||| |||||||| ||| || ||||| || Sbjct 204450 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 204391 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 ||||| ||||||||||| || | || | || || || | ||| |||||| | Sbjct 204390 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTCAGA---ACCATCAATC 204334 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCT 122866 || || ||||| | ||||||||||| Sbjct 204333 CAACGCAACGCCCAATCCGCCTTCTTCT 204306 >seq16162 Length=245457 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999 || ||||| ||||| ||||||||||||||||| || | || ||| ||||| |||| || Sbjct 40944 TGAGGTCTCGGTGTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAAC-CACCTCTG 40886 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||| | |||||| | | |||| ||||| || ||| ||||| |||| ||| Sbjct 40885 AGACATGAAATGGTATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGC 40826 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 || | ||| ||||| | ||| || | |||| | | ||| | | || | | |||| Sbjct 40825 AACTCTCATCAACATATGCTGAGGCCTCTCCACAACCTTTCCA-CTAACCTTCAACAGAT 40767 Query 112119 A-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | | || |||| |||||||||| |||||| ||| || | ||| |||| || Sbjct 40766 ACGATC-TCTCGAGGGTTTTGAAACCAAAATAATCATAGTCAAAGTCACG 40718 Score = 89.7 bits (98), Expect = 6e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 111460 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTG 111518 |||||| || ||||| || |||||||||| | |||| | || ||| | |||||||| | Sbjct 41742 CTCGTAATTAGTGTAAAGCACTTCAAACTCTTTACCC-CAGCAGTCTGCAAGACCTGGGG 41684 Query 111519 CCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGT 111578 ||| || ||||| || | |||||||||||| | | | ||||| || |||||| || | Sbjct 41683 CCTCGTTAGGACAAAACAAGGACCATTGACCATCATTTTGAACCCTCTCCATGAACAGAT 41624 Query 111579 CTGGAATCCACAGGGATGAAAAGAGATC 111606 | || | ||| || | |||||||||| Sbjct 41623 CAGGCACCCAAAGAGCAAAAAAGAGATC 41596 >seq13639 Length=40771 Score = 82.4 bits (90), Expect = 1e-10 Identities = 211/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 |||||||||||||| || | || |||||||| || || |||||||| || || | || Sbjct 21558 AAGCCATCCATCTCAGTCAACAACTGATTAATGGTCTGCTCTCTCTCGTCGTT--CCCGC 21615 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 ||| ||||| | | ||| | || || |||||||| || ||||| || || || | Sbjct 21616 CACCCATTCCAGCTCCTCTTTGTCTACCGACTGCATCAATTTCGTCAATAAACACGATGC 21675 Query 11658 ATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 | || || || | | || | ||||| | || | || || | || || || ||| Sbjct 21676 ACGG-TGCCTTACTCTTTGCTTTCTCAAACAAGTCCCTCACTCTGCTCGCCCCAACCCCA 21734 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 || |||| ||| ||||| | | || | |||| || ||| || ||| | || || Sbjct 21735 ACGAACAACTCTACAAATTCAGAAGCTGCGCACGAGAAGAACGGCACACCAGCCTCTCCT 21794 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 || | |||| || || || ||||| || |||||||| |||| | | ||| ||| Sbjct 21795 GCCACTGCTCTTGCCAGCAGTGTCTTACCGGTACCTGGAGGACCCACTAACAGGCACCCT 21854 Query 11837 CGGGGGATCTTGGCACC 11853 || ||||| ||||| Sbjct 21855 TTCGGAATCTTTGCACC 21871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627678041164800