Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq16048 116 5e-21 seq15946 116 5e-21 seq11586 116 5e-21 seq16162 84.2 3e-11 seq13658 82.4 9e-11 seq13599 82.4 9e-11 >seq16048 Length=246288 Score = 116 bits (128), Expect = 5e-21 Identities = 152/209 (73%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| |||||||||||||| || ||||||||||| |||||| | || Sbjct 204510 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 204451 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| || || ||||| || | ||| |||||||| || || ||||| ||||| ||| Sbjct 204450 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 204391 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA-GGAGCGGGACTTTGTATCAAA 130194 ||||| |||||||| || || | | | ||||||||| | | | || ||||| Sbjct 204390 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTCAGAAC----CATCAAT 204335 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCT 130223 ||| || |||||| | |||||| |||| Sbjct 204334 CCAACGCAACGCCCAATCCGCCTTCTTCT 204306 >seq15946 Length=172941 Score = 116 bits (128), Expect = 5e-21 Identities = 152/209 (73%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| |||||||||||||| || ||||||||||| |||||| | || Sbjct 58575 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 58516 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| || || ||||| || | ||| |||||||| || || ||||| ||||| ||| Sbjct 58515 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 58456 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA-GGAGCGGGACTTTGTATCAAA 130194 ||||| |||||||| || || | | | ||||||||| | | | || ||||| Sbjct 58455 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTCAGAAC----CATCAAT 58400 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCT 130223 ||| || |||||| | |||||| |||| Sbjct 58399 CCAACGCAACGCCCAATCCGCCTTCTTCT 58371 >seq11586 Length=26096 Score = 116 bits (128), Expect = 5e-21 Identities = 152/209 (73%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| |||||||||||||| || ||||||||||| |||||| | || Sbjct 4333 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 4274 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| || || ||||| || | ||| |||||||| || || ||||| ||||| ||| Sbjct 4273 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 4214 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA-GGAGCGGGACTTTGTATCAAA 130194 ||||| |||||||| || || | | | ||||||||| | | | || ||||| Sbjct 4213 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTCAGAAC----CATCAAT 4158 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCT 130223 ||| || |||||| | |||||| |||| Sbjct 4157 CCAACGCAACGCCCAATCCGCCTTCTTCT 4129 >seq16162 Length=245457 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 118931 TTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 118990 || |||||| || ||||| || |||||||||||| |||| | |||| || ||||| Sbjct 41745 TTTCTCGTAATTAGTGTAAAGCACTTCAAACTCTTTACCCCAGCAGTCTGCAAGACCTGG 41686 Query 118991 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 119050 |||| | || || || | |||||||||||| | | | ||||| || |||||| || Sbjct 41685 GGCCTCGTTAGGACAAAACAAGGACCATTGACCATCATTTTGAACCCTCTCCATGAACAG 41626 Query 119051 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA 119084 || || | ||| || || | |||||||| ||| Sbjct 41625 ATCAGGCACCCAAAGAGCAAAAAAGAGATCACGA 41592 >seq13658 Length=94377 Score = 82.4 bits (90), Expect = 9e-11 Identities = 212/319 (66%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| ||||| |||| |||| | || || | | ||||| || ||||||||||| | Sbjct 62829 GTTAGTCGCAGCGACTACAATAACACCGGTGTTGCCCTCAAAACCGTCCATCTCAGTGAG 62888 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCG 14229 || ||||| | || ||||| | || |||||| | |||| || | || | Sbjct 62889 AAGCTGATTCAGCGTCTGTTCCCTCTCGTCATTCCCTCC---ACCAATTCCAGTACCCCT 62945 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 || | || || || ||||||||||| | || || || || || |||||| || Sbjct 62946 CTGTCTCCCTACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGC 63005 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 || || | ||| ||||||| ||||| ||||| ||||||||||| ||||| | Sbjct 63006 CTTTTTGAAAAGATCACGCACTCGAGAAGCACCCACACCAACAAACATCTCGACAAATTC 63065 Query 14350 GGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 || | ||| || | || ||| || || | ||| || || ||||| || |||| Sbjct 63066 GGAACCAGAA-ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGA 63124 Query 14409 GGGTCTTCCCCGTCCCTGG 14427 ||||||| || |||||||| Sbjct 63125 GGGTCTTTCCAGTCCCTGG 63143 >seq13599 Length=79719 Score = 82.4 bits (90), Expect = 9e-11 Identities = 212/319 (66%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| ||||| |||| |||| | || || | | ||||| || ||||||||||| | Sbjct 37238 GTTAGTCGCAGCGACTACAATAACACCGGTGTTGCCCTCAAACCCGTCCATCTCAGTGAG 37179 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCG 14229 || ||||| | || ||||| | || || ||| | |||| || | || | Sbjct 37178 AAGCTGATTCAGCGTCTGTTCCCTCTCGTCGTTCCCTCC---ACCAATTCCAGTACCCCT 37122 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 || | || || || ||||||||||| | || || || || || |||||| || Sbjct 37121 CTGTCTCCCTACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGC 37062 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 || || | ||| ||||||| |||||| ||||| ||||||||||| ||||| | Sbjct 37061 CTTTTTGAAAAGATCACGCACTCGAGAGGCACCCACACCAACAAACATCTCGACAAATTC 37002 Query 14350 GGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 || | ||| || | || ||| || || | ||| || || ||||| || |||| Sbjct 37001 GGAACCAGAA-ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGA 36943 Query 14409 GGGTCTTCCCCGTCCCTGG 14427 ||||||| || |||||||| Sbjct 36942 GGGTCTTTCCAGTCCCTGG 36924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618086649921280