Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq13658 123 3e-23
seq16048 114 2e-20
seq15946 114 2e-20
seq11586 114 2e-20
seq13599 111 2e-19
seq16162 96.9 4e-15
>seq13658
Length=94377
Score = 123 bits (136), Expect = 3e-23
Identities = 328/495 (66%), Gaps = 12/495 (2%)
Strand=Plus/Plus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
|| ||||| ||||| || | | || || |||||| || || | | || |||||
Sbjct 62779 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 62838
Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643
|||| |||| || ||| || | |||||||| |||||||| || | ||| || ||
Sbjct 62839 GCGACTACAATAACACCGGTGTTGCCCTCAAAACCGTCCATCTCAGTGAGAAGCTGATTC 62898
Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700
| || ||||||| || |||||| || |||| |||| || | || | ||
Sbjct 62899 AGCGTCTGTTCCCTCTCGTCATTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 62955
Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760
|| |||||||| ||||||| ||||| ||||| || |||||| || || ||
Sbjct 62956 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 63015
Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820
||||| || || || || |||||||||||||||||||| ||||| | | | |||
Sbjct 63016 AGATCACGCACTCGAGAAGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 63075
Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879
|| | || ||| || ||| | ||| || |||||||| || || || ||||| ||
Sbjct 63076 -ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCC 63134
Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 9938
|| ||||| || | || || ||||| ||||| || ||| | ||||
Sbjct 63135 AGTCCCTGGAGGGCCGACAAGAAGAACACCTTTAGGAATGCGAGCTCCA--ACAGAAGTA 63192
Query 9939 -ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCA 9997
| |||||||||| |||||| || || || | ||| || || | ||| || | |||
Sbjct 63193 AACCTCTCAGGTTTCTTAAGGAATTCGACCACTTCCATGAAATCCTGTTTTGCTTCATCA 63252
Query 9998 ATCCCCTCAACATCG 10012
| || ||||||||
Sbjct 63253 ACACCAGCAACATCG 63267
>seq16048
Length=246288
Score = 114 bits (126), Expect = 2e-20
Identities = 151/209 (72%), Gaps = 9/209 (4%)
Strand=Plus/Plus
Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTTCCTTTGCTGAG 94806
||||| ||||||||||| || ||| ||||| | || || |||||||||
Sbjct 204308 AAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACG------TTTGCTGAG 204361
Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866
| | |||| ||||||||||| ||||| || ||||| ||||| |||||||| |||
Sbjct 204362 AGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATT 204421
Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926
| |||||| || ||||| || || ||||| || | |||||| || || || || |||
Sbjct 204422 TTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCT 204481
Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||||||| || ||| || |||||
Sbjct 204482 CGTGACGAGGGTCTTCACTGCGACTTTGC 204510
>seq15946
Length=172941
Score = 114 bits (126), Expect = 2e-20
Identities = 151/209 (72%), Gaps = 9/209 (4%)
Strand=Plus/Plus
Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTTCCTTTGCTGAG 94806
||||| ||||||||||| || ||| ||||| | || || |||||||||
Sbjct 58373 AAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACG------TTTGCTGAG 58426
Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866
| | |||| ||||||||||| ||||| || ||||| ||||| |||||||| |||
Sbjct 58427 AGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATT 58486
Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926
| |||||| || ||||| || || ||||| || | |||||| || || || || |||
Sbjct 58487 TTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCT 58546
Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||||||| || ||| || |||||
Sbjct 58547 CGTGACGAGGGTCTTCACTGCGACTTTGC 58575
>seq11586
Length=26096
Score = 114 bits (126), Expect = 2e-20
Identities = 151/209 (72%), Gaps = 9/209 (4%)
Strand=Plus/Plus
Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTTCCTTTGCTGAG 94806
||||| ||||||||||| || ||| ||||| | || || |||||||||
Sbjct 4131 AAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACG------TTTGCTGAG 4184
Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866
| | |||| ||||||||||| ||||| || ||||| ||||| |||||||| |||
Sbjct 4185 AGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATT 4244
Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926
| |||||| || ||||| || || ||||| || | |||||| || || || || |||
Sbjct 4245 TTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCT 4304
Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||||||| || ||| || |||||
Sbjct 4305 CGTGACGAGGGTCTTCACTGCGACTTTGC 4333
>seq13599
Length=79719
Score = 111 bits (122), Expect = 2e-19
Identities = 325/495 (66%), Gaps = 12/495 (2%)
Strand=Plus/Minus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
|| ||||| ||||| || | | || || |||||| || || | | || |||||
Sbjct 37288 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 37229
Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643
|||| |||| || ||| || | ||||| || |||||||| || | ||| || ||
Sbjct 37228 GCGACTACAATAACACCGGTGTTGCCCTCAAACCCGTCCATCTCAGTGAGAAGCTGATTC 37169
Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700
| || ||||||| || || ||| || |||| |||| || | || | ||
Sbjct 37168 AGCGTCTGTTCCCTCTCGTCGTTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 37112
Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760
|| |||||||| ||||||| ||||| ||||| || |||||| || || ||
Sbjct 37111 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 37052
Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820
||||| || || || ||| |||||||||||||||||||| ||||| | | | |||
Sbjct 37051 AGATCACGCACTCGAGAGGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 36992
Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879
|| | || ||| || ||| | ||| || |||||||| || || || ||||| ||
Sbjct 36991 -ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCC 36933
Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 9938
|| ||||| || | || || ||||| ||||| || ||| | | ||
Sbjct 36932 AGTCCCTGGAGGGCCGACAAGAAGAACACCTTTAGGAATGCGAGCTCCA--ACAGATGTG 36875
Query 9939 -ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCA 9997
| ||||| |||| |||||| || || || | ||| || || | ||| || | |||
Sbjct 36874 AACCTCTCGGGTTTCTTAAGGAATTCGACCACTTCCATGAAATCCTGTTTTGCTTCATCA 36815
Query 9998 ATCCCCTCAACATCG 10012
| || ||||||||
Sbjct 36814 ACACCAGCAACATCG 36800
>seq16162
Length=245457
Score = 96.9 bits (106), Expect = 4e-15
Identities = 163/228 (71%), Gaps = 6/228 (3%)
Strand=Plus/Plus
Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT-TCAACGGC 104198
|||| |||| || |||||||||| |||||||||| |||| || | ||||| | | ||
Sbjct 40721 GACTTTGACTATGATTATTTTGGTTTCAAAACCCTCGAGA-GATCGTATCTGTTGAAGGT 40779
Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258
| | | ||| |||| | || ||| | ||||| ||| | || || ||||||| |
Sbjct 40780 TAGTGGAAAGGTTG-TGGAGAGGCCTCAGCATATGTTGATGAGAGTTGCAGTCGGTATCC 40838
Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTC 104317
|| ||| || ||||| |||| | | |||||| | ||||| || |||| ||||
Sbjct 40839 ATAAGGACGATATTGAGTCTGCAATCAAAACATACCATTTCATGTCTCAGAGGTG-GTTC 40897
Query 104318 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365
| ||| || | || ||||||||||||||||| ||||| ||||| |||
Sbjct 40898 ACTCATGCTTCCCCGACCCTCTTCAATGCTGGCACACCGAGACCTCAA 40945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582932074213120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |