Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq13658 123 3e-23 seq16048 114 2e-20 seq15946 114 2e-20 seq11586 114 2e-20 seq13599 111 2e-19 seq16162 96.9 4e-15 >seq13658 Length=94377 Score = 123 bits (136), Expect = 3e-23 Identities = 328/495 (66%), Gaps = 12/495 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| ||||| || | | || || |||||| || || | | || ||||| Sbjct 62779 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 62838 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 |||| |||| || ||| || | |||||||| |||||||| || | ||| || || Sbjct 62839 GCGACTACAATAACACCGGTGTTGCCCTCAAAACCGTCCATCTCAGTGAGAAGCTGATTC 62898 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||||| || |||||| || |||| |||| || | || | || Sbjct 62899 AGCGTCTGTTCCCTCTCGTCATTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 62955 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || |||||||| ||||||| ||||| ||||| || |||||| || || || Sbjct 62956 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 63015 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || || |||||||||||||||||||| ||||| | | | ||| Sbjct 63016 AGATCACGCACTCGAGAAGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 63075 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || | || ||| || ||| | ||| || |||||||| || || || ||||| || Sbjct 63076 -ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCC 63134 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 9938 || ||||| || | || || ||||| ||||| || ||| | |||| Sbjct 63135 AGTCCCTGGAGGGCCGACAAGAAGAACACCTTTAGGAATGCGAGCTCCA--ACAGAAGTA 63192 Query 9939 -ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCA 9997 | |||||||||| |||||| || || || | ||| || || | ||| || | ||| Sbjct 63193 AACCTCTCAGGTTTCTTAAGGAATTCGACCACTTCCATGAAATCCTGTTTTGCTTCATCA 63252 Query 9998 ATCCCCTCAACATCG 10012 | || |||||||| Sbjct 63253 ACACCAGCAACATCG 63267 >seq16048 Length=246288 Score = 114 bits (126), Expect = 2e-20 Identities = 151/209 (72%), Gaps = 9/209 (4%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTTCCTTTGCTGAG 94806 ||||| ||||||||||| || ||| ||||| | || || ||||||||| Sbjct 204308 AAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACG------TTTGCTGAG 204361 Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 | | |||| ||||||||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 204362 AGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATT 204421 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | |||||| || ||||| || || ||||| || | |||||| || || || || ||| Sbjct 204422 TTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCT 204481 Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||| || ||| || ||||| Sbjct 204482 CGTGACGAGGGTCTTCACTGCGACTTTGC 204510 >seq15946 Length=172941 Score = 114 bits (126), Expect = 2e-20 Identities = 151/209 (72%), Gaps = 9/209 (4%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTTCCTTTGCTGAG 94806 ||||| ||||||||||| || ||| ||||| | || || ||||||||| Sbjct 58373 AAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACG------TTTGCTGAG 58426 Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 | | |||| ||||||||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 58427 AGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATT 58486 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | |||||| || ||||| || || ||||| || | |||||| || || || || ||| Sbjct 58487 TTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCT 58546 Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||| || ||| || ||||| Sbjct 58547 CGTGACGAGGGTCTTCACTGCGACTTTGC 58575 >seq11586 Length=26096 Score = 114 bits (126), Expect = 2e-20 Identities = 151/209 (72%), Gaps = 9/209 (4%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTTCCTTTGCTGAG 94806 ||||| ||||||||||| || ||| ||||| | || || ||||||||| Sbjct 4131 AAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACG------TTTGCTGAG 4184 Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 | | |||| ||||||||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 4185 AGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATT 4244 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | |||||| || ||||| || || ||||| || | |||||| || || || || ||| Sbjct 4245 TTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCT 4304 Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||| || ||| || ||||| Sbjct 4305 CGTGACGAGGGTCTTCACTGCGACTTTGC 4333 >seq13599 Length=79719 Score = 111 bits (122), Expect = 2e-19 Identities = 325/495 (66%), Gaps = 12/495 (2%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| ||||| || | | || || |||||| || || | | || ||||| Sbjct 37288 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 37229 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 |||| |||| || ||| || | ||||| || |||||||| || | ||| || || Sbjct 37228 GCGACTACAATAACACCGGTGTTGCCCTCAAACCCGTCCATCTCAGTGAGAAGCTGATTC 37169 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||||| || || ||| || |||| |||| || | || | || Sbjct 37168 AGCGTCTGTTCCCTCTCGTCGTTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 37112 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || |||||||| ||||||| ||||| ||||| || |||||| || || || Sbjct 37111 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 37052 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || ||| |||||||||||||||||||| ||||| | | | ||| Sbjct 37051 AGATCACGCACTCGAGAGGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 36992 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || | || ||| || ||| | ||| || |||||||| || || || ||||| || Sbjct 36991 -ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCC 36933 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 9938 || ||||| || | || || ||||| ||||| || ||| | | || Sbjct 36932 AGTCCCTGGAGGGCCGACAAGAAGAACACCTTTAGGAATGCGAGCTCCA--ACAGATGTG 36875 Query 9939 -ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCA 9997 | ||||| |||| |||||| || || || | ||| || || | ||| || | ||| Sbjct 36874 AACCTCTCGGGTTTCTTAAGGAATTCGACCACTTCCATGAAATCCTGTTTTGCTTCATCA 36815 Query 9998 ATCCCCTCAACATCG 10012 | || |||||||| Sbjct 36814 ACACCAGCAACATCG 36800 >seq16162 Length=245457 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT-TCAACGGC 104198 |||| |||| || |||||||||| |||||||||| |||| || | ||||| | | || Sbjct 40721 GACTTTGACTATGATTATTTTGGTTTCAAAACCCTCGAGA-GATCGTATCTGTTGAAGGT 40779 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 | | | ||| |||| | || ||| | ||||| ||| | || || ||||||| | Sbjct 40780 TAGTGGAAAGGTTG-TGGAGAGGCCTCAGCATATGTTGATGAGAGTTGCAGTCGGTATCC 40838 Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTC 104317 || ||| || ||||| |||| | | |||||| | ||||| || |||| |||| Sbjct 40839 ATAAGGACGATATTGAGTCTGCAATCAAAACATACCATTTCATGTCTCAGAGGTG-GTTC 40897 Query 104318 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 | ||| || | || ||||||||||||||||| ||||| ||||| ||| Sbjct 40898 ACTCATGCTTCCCCGACCCTCTTCAATGCTGGCACACCGAGACCTCAA 40945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582932074213120