Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq16048 134 2e-26 seq15946 132 5e-26 seq11586 132 5e-26 >seq16048 Length=246288 Score = 134 bits (148), Expect = 2e-26 Identities = 497/761 (65%), Gaps = 36/761 (5%) Strand=Plus/Plus Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 |||| || | |||||||||| || || |||||||| || || |||||| |||| Sbjct 204057 ACGATGAACGCCATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCATCTGATGGGATTG 204116 Query 59737 TGATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTC 59794 | | || || | | | || | ||| ||||| | ||| | |||| || || | Sbjct 204117 TTCTCGAGAACCTCG-CGTGT-CGGTTCATGAAGGAGATTCAGCTCCCCGAAGCGCGTGC 204174 Query 59795 GTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||| |||| || |||| | ||| ||| || || |||| ||||||||| || | Sbjct 204175 GTTTTACGGGTTTCAGATTGCGATTGAGAATATTCATTCGGAGATGTACTCGCTTTTGCT 204234 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 || | || | ||||| || |||| | | |||| ||||| | |||||| Sbjct 204235 TGAGACGTATATTCAGGATTCGTCGTTGAAGTCGAATTTGTTTCGTGCTGTCGAGACGAT 204294 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA--GTCCTGGAGCATC 59971 || || || || | || || || ||||| ||| ||||| || || ||| || | Sbjct 204295 TCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTG-AGA--C 204351 Query 59972 ATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| | | | || |||||||| || || || || || ||||| ||||| || Sbjct 204352 GTTTGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTT 204411 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 ||| || ||||| ||||| ||||||||||| || |||||||| | | ||||| || || Sbjct 204412 CTGCGCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGA 204471 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATT-CACAC- 60149 || ||||| || |||||||| || || || ||||| || ||| || || | Sbjct 204472 ACTCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGC-TTG----TCTTTTGTACTCG 204526 Query 60150 CTATTG--GAAAAATGCCCTTCCAAGGA---TATTCACAAGATTGTTC-AGTGGGCTTGT 60203 || ||| ||| || | | |||| | | | ||||||||| || || || Sbjct 204527 CTGTTGAAGAAGAAAG--TGAGCGAGGAGCGTGTGAAGGAGATTGTTCGAGAGGCGGTG- 204583 Query 60204 GAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCT 60263 || | ||||| ||||| || || ||||| || ||| | | || ||| ||| Sbjct 204584 GAGATTGAGAGGGAGTTTGTCTGTGACGCGCTCCCCTGCGCGTTAGTTGGGATGAACGGG 204643 Query 60264 GGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATG-----GCCCAGTTTG 60318 | ||||| | ||||| ||||||| || ||| | | || || ||| Sbjct 204644 GATTTAATGAGTCGCTACATCGAGTTTGTGGCAGACAGGTTGTTGGGTGCGCTTGGTTGT 204703 Query 60319 GAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGG 60378 | |||||| || || |||| ||||| || || ||||||||| || |||||| Sbjct 204704 GGGAAGGA-----GTATGGTGTGACGAACCCGTTTGATTGGATGGAGTTGATTTCGTTGC 204758 Query 60379 AAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 | |||||||| ||||||||||||||||| |||||||| ||| Sbjct 204759 AGGGGAAGACAAACTTCTTTGAGAAGCGTGTCGGGGAGTAT 204799 >seq15946 Length=172941 Score = 132 bits (146), Expect = 5e-26 Identities = 490/750 (65%), Gaps = 36/750 (5%) Strand=Plus/Plus Query 59688 CATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAAT 59747 |||||||||| || || |||||||| || || |||||| ||||| | || || Sbjct 58133 CATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCATCTGATGGGATTGTTCTCGAGAAC 58192 Query 59748 ATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGT 59805 | | | || | ||| ||||| | ||| | |||| || || |||| |||| || Sbjct 58193 CTCG-CGTGT-CGGTTCATGAAGGAGATTCAGCTCCCCGAAGCGCGTGCGTTTTACGGGT 58250 Query 59806 ATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGG 59865 |||| | ||| ||| || || |||| ||||||||| || | || | || Sbjct 58251 TTCAGATTGCGATTGAGAATATTCATTCGGAGATGTACTCGCTTTTGCTTGAGACGTATA 58310 Query 59866 TCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTA 59925 | ||||| || |||| | | |||| ||||| | |||||| || || || | Sbjct 58311 TTCAGGATTCGTCGTTGAAGTCGAATTTGTTTCGTGCTGTCGAGACGATTCCTGCGGTGA 58370 Query 59926 AACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA--GTCCTGGAGCATCATTTGCACAAC 59982 | | || || || ||||| ||| ||||| || || ||| || | ||||| | Sbjct 58371 AGAAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTG-AGA--CGTTTGCTGAGA 58427 Query 59983 GTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTT 60042 | | || |||||||| || || || || || ||||| ||||| ||||| || |||| Sbjct 58428 GGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATTT 58487 Query 60043 TCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCC 60102 | ||||| ||||||||||| || |||||||| | | ||||| || || || ||||| | Sbjct 58488 TTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCTC 58547 Query 60103 GGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATT-CACAC-CTATTG--GAA 60158 | |||||||| || || || ||||| || ||| || || | || ||| ||| Sbjct 58548 GTGACGAGGGTCTTCACTGCGACTTTGC-TTG----TCTTTTGTACTCGCTGTTGAAGAA 58602 Query 60159 AAATGCCCTTCCAAGGA---TATTCACAAGATTGTTC-AGTGGGCTTGTGAAGTGGAGAG 60214 || | | |||| | | | ||||||||| || || || || | ||||| Sbjct 58603 GAAAG--TGAGCGAGGAGCGTGTGAAGGAGATTGTTCGAGAGGCGGTG-GAGATTGAGAG 58659 Query 60215 CGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGAC 60274 ||||| || || ||||| || ||| | | || ||| ||| | ||||| Sbjct 58660 GGAGTTTGTCTGTGACGCGCTCCCCTGCGCGTTAGTTGGGATGAACGGGGATTTAATGAG 58719 Query 60275 GCAGTACATTCAGTTTGTCGCGGACCGCCTCATG-----GCCCAGTTTGGAGAAGGACCA 60329 | ||||| ||||||| || ||| | | || || ||| | |||||| Sbjct 58720 TCGCTACATCGAGTTTGTGGCAGACAGGTTGTTGGGTGCGCTTGGTTGTGGGAAGGA--- 58776 Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || || |||| ||||| || || ||||||||| || |||||| | |||||||| Sbjct 58777 --GTATGGTGTGACGAACCCGTTTGATTGGATGGAGTTGATTTCGTTGCAGGGGAAGACA 58834 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 ||||||||||||||||| |||||||| ||| Sbjct 58835 AACTTCTTTGAGAAGCGTGTCGGGGAGTAT 58864 >seq11586 Length=26096 Score = 132 bits (146), Expect = 5e-26 Identities = 490/750 (65%), Gaps = 36/750 (5%) Strand=Plus/Plus Query 59688 CATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAAT 59747 |||||||||| || || |||||||| || || |||||| ||||| | || || Sbjct 3891 CATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCATCTGATGGGATTGTTCTCGAGAAC 3950 Query 59748 ATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGT 59805 | | | || | ||| ||||| | ||| | |||| || || |||| |||| || Sbjct 3951 CTCG-CGTGT-CGGTTCATGAAGGAGATTCAGCTCCCCGAAGCGCGTGCGTTTTACGGGT 4008 Query 59806 ATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGG 59865 |||| | ||| ||| || || |||| ||||||||| || | || | || Sbjct 4009 TTCAGATTGCGATTGAGAATATTCATTCGGAGATGTACTCGCTTTTGCTTGAGACGTATA 4068 Query 59866 TCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTA 59925 | ||||| || |||| | | |||| ||||| | |||||| || || || | Sbjct 4069 TTCAGGATTCGTCGTTGAAGTCGAATTTGTTTCGTGCTGTCGAGACGATTCCTGCGGTGA 4128 Query 59926 AACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA--GTCCTGGAGCATCATTTGCACAAC 59982 | | || || || ||||| ||| ||||| || || ||| || | ||||| | Sbjct 4129 AGAAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTG-AGA--CGTTTGCTGAGA 4185 Query 59983 GTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTT 60042 | | || |||||||| || || || || || ||||| ||||| ||||| || |||| Sbjct 4186 GGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATTT 4245 Query 60043 TCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCC 60102 | ||||| ||||||||||| || |||||||| | | ||||| || || || ||||| | Sbjct 4246 TTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCTC 4305 Query 60103 GGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATT-CACAC-CTATTG--GAA 60158 | |||||||| || || || ||||| || ||| || || | || ||| ||| Sbjct 4306 GTGACGAGGGTCTTCACTGCGACTTTGC-TTG----TCTTTTGTACTCGCTGTTGAAGAA 4360 Query 60159 AAATGCCCTTCCAAGGA---TATTCACAAGATTGTTC-AGTGGGCTTGTGAAGTGGAGAG 60214 || | | |||| | | | ||||||||| || || || || | ||||| Sbjct 4361 GAAAG--TGAGCGAGGAGCGTGTGAAGGAGATTGTTCGAGAGGCGGTG-GAGATTGAGAG 4417 Query 60215 CGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGAC 60274 ||||| || || ||||| || ||| | | || ||| ||| | ||||| Sbjct 4418 GGAGTTTGTCTGTGACGCGCTCCCCTGCGCGTTAGTTGGGATGAACGGGGATTTAATGAG 4477 Query 60275 GCAGTACATTCAGTTTGTCGCGGACCGCCTCATG-----GCCCAGTTTGGAGAAGGACCA 60329 | ||||| ||||||| || ||| | | || || ||| | |||||| Sbjct 4478 TCGCTACATCGAGTTTGTGGCAGACAGGTTGTTGGGTGCGCTTGGTTGTGGGAAGGA--- 4534 Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || || |||| ||||| || || ||||||||| || |||||| | |||||||| Sbjct 4535 --GTATGGTGTGACGAACCCGTTTGATTGGATGGAGTTGATTTCGTTGCAGGGGAAGACA 4592 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 ||||||||||||||||| |||||||| ||| Sbjct 4593 AACTTCTTTGAGAAGCGTGTCGGGGAGTAT 4622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548215651422720