Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4846 89.7 6e-13 seq16144 86.0 7e-12 seq44325 84.2 2e-11 seq44302 84.2 2e-11 seq39105 84.2 2e-11 seq16327 84.2 2e-11 seq16187 84.2 2e-11 seq11336 84.2 2e-11 seq10577 84.2 2e-11 seq16127 82.4 8e-11 >seq4846 Length=10363 Score = 89.7 bits (98), Expect = 6e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 80161 TGCTCCCGGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATC 80220 ||||||||| |||| | |||||| ||||||| ||| |||||||||||||||||||||| | Sbjct 4341 TGCTCCCGGCGAGGCTCGAACTCGCGACTTTCGGCTCATAAGACCAACACTCTAACCAGC 4400 Query 80221 TGAGTTACG 80229 |||| |||| Sbjct 4401 TGAGCTACG 4409 >seq16144 Length=222885 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 49525 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 49466 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 49465 TGAGCTACGAGAGC 49452 >seq44325 Length=9106 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 80161 TGCTCCCGGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATC 80220 ||||||||| |||| |||||||| |||| || ||| |||||||||||| ||||||||| | Sbjct 5638 TGCTCCCGGCGAGGCTTGAACTCGCGACCTTCGGCTCATAAGACCAACGCTCTAACCAAC 5697 Query 80221 TGAGTTACG 80229 |||| |||| Sbjct 5698 TGAGCTACG 5706 >seq44302 Length=8854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 80161 TGCTCCCGGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATC 80220 ||||||||| |||| ||||||||||||| || ||| ||||||||||| ||||||||| | Sbjct 1539 TGCTCCCGGCGAGGCTTGAACTCACGACCTTCGGCTCATAAGACCAATGCTCTAACCAAC 1598 Query 80221 TGAGTTACG 80229 |||| |||| Sbjct 1599 TGAGCTACG 1607 >seq39105 Length=1799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1156 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1215 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 1216 TGAGCTACGAGAGCAA 1231 >seq16327 Length=507966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 463036 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 462977 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 462976 TGAGCTACGAGAGCAA 462961 >seq16187 Length=266656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 102634 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 102693 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||| ||| Sbjct 102694 ACTGAGCTACGAGAGC 102709 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 103799 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 103858 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||| ||| Sbjct 103859 ACTGAGCTACGAGAGC 103874 >seq11336 Length=20404 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 80161 TGCTCCCGGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATC 80220 ||||||||| |||| | |||||| |||| || ||| |||||||||||||||||||||| | Sbjct 5894 TGCTCCCGGCGAGGCTCGAACTCGCGACCTTCGGCTCATAAGACCAACACTCTAACCAAC 5835 Query 80221 TGAGTTACG 80229 |||| |||| Sbjct 5834 TGAGCTACG 5826 >seq10577 Length=18087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 14997 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 14938 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 14937 TGAGCTACGAGAGCAA 14922 >seq16127 Length=212234 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 70347 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 70288 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 70287 TGAGCTACGAGAGCA 70273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546907589062400