Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_028663.1
Length=188632
Score E
Sequences producing significant alignments: (Bits) Value
seq15224 237 2e-57
seq15036 152 6e-32
>seq15224
Length=172684
Score = 237 bits (262), Expect = 2e-57
Identities = 290/396 (73%), Gaps = 0/396 (0%)
Strand=Plus/Plus
Query 176499 TGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCA 176558
|||||| || || || || | || || | || |||||| | |||||||| | |||||
Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377
Query 176559 AGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGT 176618
|||| || ||||||||||||||| | || ||||| ||||| |||||||| ||| ||||
Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437
Query 176619 ATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGT 176678
|||||| || ||||||||||| || ||||||||||| || ||| | || ||||| |||||
Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497
Query 176679 GTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAG 176738
|| || || || || || || ||||| || | || |||||| | ||||
Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557
Query 176739 AGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGAC 176798
|| || || ||||| ||||| || | ||||||| ||| || ||||| ||||| ||
Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617
Query 176799 ATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTT 176858
|| || || |||||||| || | ||| |||||||| | |||||||| |||||| |||
Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677
Query 176859 CAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGC 176894
||| || || | | | ||||||||| | || ||
Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGC 89713
Score = 100 bits (110), Expect = 3e-16
Identities = 131/182 (72%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 176770 GGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTT 176829
||||||| ||| || ||||| ||||| || || || || |||||||| || ||||| |||
Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793
Query 176830 GGTCGTCTTATCTTCCAGTAT------GCTTCTTTCAATAACTCAAGAAGTCTTCACTTC 176883
||||| | |||||||| ||| ||| |||||| || || | | | ||||||
Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853
Query 176884 TTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATG 176943
||| | || || | || || || | || ||||||||||| | ||| || |||| |||
Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913
Query 176944 GC 176945
||
Sbjct 89914 GC 89915
Score = 86.0 bits (94), Expect = 8e-12
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 176230 CCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAAC 176289
|| || ||| |||| || || ||||| ||||| || | ||||||||||| || ||||||
Sbjct 89144 CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAAC 89203
Query 176290 AACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCA 176349
|| || || || || || | | || | || || || || | || || || |||
Sbjct 89204 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCA 89263
Query 176350 ATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATA 176399
|| |||||||||||| | ||||| || ||| | || ||||| || || ||
Sbjct 89264 ATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTA 89313
>seq15036
Length=77882
Score = 152 bits (168), Expect = 6e-32
Identities = 198/272 (73%), Gaps = 5/272 (2%)
Strand=Plus/Plus
Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354
||||||||| | || |||||||| || ||| | || | || ||||| | ||||||||
Sbjct 5562 ACCTGTAACTATTCAATATCCTTATGAAAAATTGATCACCTCGGAGAGGTTTCGTGGTCG 5621
Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414
||||||| ||| ||||| || ||||| || ||||| |||||||| | |||| || ||
Sbjct 5622 AATACACTTTGAATTTGATAAATGTATTGCTTGTGAAGTGTGTGTTCGCCTATGTCCAAT 5681
Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGAA--CTTAGA 19472
|| |||| || || ||||| | | ||| | | | || || || || ||||
Sbjct 5682 AGATTTACCCGTTGTTGATTGTATTAGAAACTACTATTCGAAAAAAAACGATTGCTTA-- 5739
Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532
||||| || || |||||| ||||| || || ||||| || || |||||||| |||
Sbjct 5740 -ATTATAGCATTGATTTTGGAATCTGTATATTTTGTGGTAATTGTGTTGAGTATTGTCCA 5798
Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGA 19564
||||| ||| |||| ||||| |||||||||||
Sbjct 5799 ACAAATTGTTTATCAATGACGGAAGAATATGA 5830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603154270556160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |