Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq15224 237 2e-57 seq15036 152 6e-32 >seq15224 Length=172684 Score = 237 bits (262), Expect = 2e-57 Identities = 290/396 (73%), Gaps = 0/396 (0%) Strand=Plus/Plus Query 176499 TGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCA 176558 |||||| || || || || | || || | || |||||| | |||||||| | ||||| Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377 Query 176559 AGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGT 176618 |||| || ||||||||||||||| | || ||||| ||||| |||||||| ||| |||| Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437 Query 176619 ATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGT 176678 |||||| || ||||||||||| || ||||||||||| || ||| | || ||||| ||||| Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497 Query 176679 GTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAG 176738 || || || || || || || ||||| || | || |||||| | |||| Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557 Query 176739 AGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGAC 176798 || || || ||||| ||||| || | ||||||| ||| || ||||| ||||| || Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617 Query 176799 ATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTT 176858 || || || |||||||| || | ||| |||||||| | |||||||| |||||| ||| Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677 Query 176859 CAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGC 176894 ||| || || | | | ||||||||| | || || Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGC 89713 Score = 100 bits (110), Expect = 3e-16 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 176770 GGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTT 176829 ||||||| ||| || ||||| ||||| || || || || |||||||| || ||||| ||| Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 176830 GGTCGTCTTATCTTCCAGTAT------GCTTCTTTCAATAACTCAAGAAGTCTTCACTTC 176883 ||||| | |||||||| ||| ||| |||||| || || | | | |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 176884 TTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATG 176943 ||| | || || | || || || | || ||||||||||| | ||| || |||| ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 176944 GC 176945 || Sbjct 89914 GC 89915 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 176230 CCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAAC 176289 || || ||| |||| || || ||||| ||||| || | ||||||||||| || |||||| Sbjct 89144 CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAAC 89203 Query 176290 AACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCA 176349 || || || || || || | | || | || || || || | || || || ||| Sbjct 89204 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCA 89263 Query 176350 ATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATA 176399 || |||||||||||| | ||||| || ||| | || ||||| || || || Sbjct 89264 ATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTA 89313 >seq15036 Length=77882 Score = 152 bits (168), Expect = 6e-32 Identities = 198/272 (73%), Gaps = 5/272 (2%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || | || ||||| | |||||||| Sbjct 5562 ACCTGTAACTATTCAATATCCTTATGAAAAATTGATCACCTCGGAGAGGTTTCGTGGTCG 5621 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 ||||||| ||| ||||| || ||||| || ||||| |||||||| | |||| || || Sbjct 5622 AATACACTTTGAATTTGATAAATGTATTGCTTGTGAAGTGTGTGTTCGCCTATGTCCAAT 5681 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGAA--CTTAGA 19472 || |||| || || ||||| | | ||| | | | || || || || |||| Sbjct 5682 AGATTTACCCGTTGTTGATTGTATTAGAAACTACTATTCGAAAAAAAACGATTGCTTA-- 5739 Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532 ||||| || || |||||| ||||| || || ||||| || || |||||||| ||| Sbjct 5740 -ATTATAGCATTGATTTTGGAATCTGTATATTTTGTGGTAATTGTGTTGAGTATTGTCCA 5798 Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGA 19564 ||||| ||| |||| ||||| ||||||||||| Sbjct 5799 ACAAATTGTTTATCAATGACGGAAGAATATGA 5830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603154270556160