Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_029046.1
Length=50827
Score E
Sequences producing significant alignments: (Bits) Value
seq11475 86.0 2e-12
seq10773 86.0 2e-12
seq14102 84.2 7e-12
seq12877 80.6 9e-11
>seq11475
Length=22225
Score = 86.0 bits (94), Expect = 2e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209
||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| ||||
Sbjct 8848 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 8907
Query 21210 CTGTCTCCGCAA 21221
||||||||||||
Sbjct 8908 CTGTCTCCGCAA 8919
>seq10773
Length=30986
Score = 86.0 bits (94), Expect = 2e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209
||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| ||||
Sbjct 17800 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 17859
Query 21210 CTGTCTCCGCAA 21221
||||||||||||
Sbjct 17860 CTGTCTCCGCAA 17871
>seq14102
Length=51791
Score = 84.2 bits (92), Expect = 7e-12
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209
||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| ||||
Sbjct 3246 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 3187
Query 21210 CTGTCTCCGCA 21220
|||||||||||
Sbjct 3186 CTGTCTCCGCA 3176
>seq12877
Length=40778
Score = 80.6 bits (88), Expect = 9e-11
Identities = 61/72 (85%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209
||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| ||||
Sbjct 6373 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 6314
Query 21210 CTGTCTCCGCAA 21221
|||||||||||
Sbjct 6313 ATGTCTCCGCAA 6302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 162437780971584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |