Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq11475 86.0 2e-12 seq10773 86.0 2e-12 seq14102 84.2 7e-12 seq12877 80.6 9e-11 >seq11475 Length=22225 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 8848 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 8907 Query 21210 CTGTCTCCGCAA 21221 |||||||||||| Sbjct 8908 CTGTCTCCGCAA 8919 >seq10773 Length=30986 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 17800 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 17859 Query 21210 CTGTCTCCGCAA 21221 |||||||||||| Sbjct 17860 CTGTCTCCGCAA 17871 >seq14102 Length=51791 Score = 84.2 bits (92), Expect = 7e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 3246 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 3187 Query 21210 CTGTCTCCGCA 21220 ||||||||||| Sbjct 3186 CTGTCTCCGCA 3176 >seq12877 Length=40778 Score = 80.6 bits (88), Expect = 9e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 6373 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 6314 Query 21210 CTGTCTCCGCAA 21221 ||||||||||| Sbjct 6313 ATGTCTCCGCAA 6302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162437780971584