Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq13853 111 1e-19 seq15779 84.2 2e-11 >seq13853 Length=43806 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||| || || || || || || | || ||||||||| | Sbjct 18650 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAGACAATCACTCTAGAAGTCGAAAGCTCT 18709 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| |||||| |||||| ||||| ||||| |||| ||| | Sbjct 18710 GACACGATCGACAAT--GTCAAAACAAAAATCCAAGACAAGGAAGGAATTCCCCCGGACC 18767 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || ||||| || ||||| | || |||| || | ||| | ||||||| Sbjct 18768 AGCAACGTCTGATCTTTGCTGGTAAACAGCTTGAAGACGGCCGTACTTTGGCTGATTACA 18827 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || |||||| | ||| | ||||| || Sbjct 18828 ACATCCAAAAGGAGTCGACCCTTCACTTGGTTCTTCGTCTACGTGGTGG 18876 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||| || || | || || || | || ||||||||| | Sbjct 9068 ATGCAAATCTTCGTGAAAACCCTAACCGACAAGACAATCACTCTAGAAGTCGAAAGCTCT 9127 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| |||||| |||||| ||||| ||||| |||| ||| | Sbjct 9128 GACACGATCGACAAT--GTCAAAACAAAAATCCAAGACAAGGAAGGAATTCCCCCGGACC 9185 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || ||||| || ||||| | || |||| || | ||| | ||||||| Sbjct 9186 AGCAACGTCTGATCTTTGCTGGTAAACAGCTTGAAGACGGCCGTACTTTGGCTGATTACA 9245 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || |||||| | ||| | ||||| || Sbjct 9246 ACATCCAAAAGGAGTCGACCCTTCACTTGGTTCTTCGTCTACGTGGTGG 9294 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||| || ||||| || ||||| |||| || || ||| || Sbjct 19106 ATGCAGATCTTCGTGAAAACGCTGACTGGAAAGACGATTACCCTTGAGGTTGAGAGCTCC 19165 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || ||||| | | | || |||| | || || || || || |||| || Sbjct 19166 GACACCATCGACAAT-GTTAAGACCAAAATTCAG--GATAAGGAGGGCATTCCCCCAGAT 19222 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | ||||||||||| || ||| | || || | || | ||| | ||||| Sbjct 19223 CAGCAGAGGCTGATTTTTGCCGGGAAGCAACTTGAGGATGGTCGTACTTTGGCTGATTAT 19282 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||| |||||||| ||||| |||||| | ||||| || Sbjct 19283 AACATTCAGAAGGAGTCGACTTTGCACTTGGTCTTGCGTCTCCGTGGTGG 19332 >seq15779 Length=145502 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| | || || || || || |||| |||||||| || Sbjct 121700 ATGCAAATCTTCGTCAAAACCTTAACCGGCAAGACCATCACTCTTGAGGTCGAAAGTTCC 121759 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| ||||| ||| || ||||| ||||| | || || | Sbjct 121760 GACACTATCGACAAT--GTCAAGACAAAGATCCAAGACAAGGAAGGGATCCCCCCAGACC 121817 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || ||||| | || |||| |||| | | | || |||| Sbjct 121818 AGCAAAGGCTGATCTTTGCTGGCAAACAGCTTGAAGACGGTCGCACCCTAGCTGACTACA 121877 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| ||| | || |||||| | ||||||||||| || Sbjct 121878 ACATTCAGAAGGAGTCGACTCTTCACTTGGTTCTCCGTTTGCGTGGTGG 121926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355666850052576