Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq13853 102 7e-17 seq16084 98.7 9e-16 seq14446 95.1 1e-14 seq44944 93.3 4e-14 seq14479 93.3 4e-14 >seq13853 Length=43806 Score = 102 bits (112), Expect = 7e-17 Identities = 176/247 (71%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || || | ||| || ||||||| ||| || || ||| |||| Sbjct 9763 ACGAAAATTTG--CATACCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTT 9706 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || ||||| ||||| | ||| || | || || ||||| || || || || || | || Sbjct 9705 GAATGTTATAGTCGGCCAATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAAC 9646 Query 39161 GCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCG-CCA 39217 ||||||||| ||||||| | || ||| |||||| ||| || ||| |||| ||| | | | Sbjct 9645 GCTGCTGGTCCGGTGGG-ATGCCCTCCTTGTCCTGGATCTT-TGTCTTGA-CGTTGTCGA 9589 Query 39218 CCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 || ||||| ||| || || | ||||| | || ||||||| || || ||||| | Sbjct 9588 TGGTGTCGCTGCTCTCAACCTCGAGAGTGATGGTCTTCCCCGTCAAGGTCTTTACAAAAA 9529 Query 39278 TTTGCAT 39284 | ||||| Sbjct 9528 TCTGCAT 9522 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || | ||| || ||||||| ||| || || ||| ||||| || ||||| ||||| Sbjct 19788 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 19729 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 | ||| || | || || ||||| || || || || || | ||||||||||| ||||||| Sbjct 19728 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 19669 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCG-CCACCGTATCGCTCGACTCC 39234 | || ||| |||||| ||| || ||| |||| ||| | | | || ||||| ||| Sbjct 19668 -ATGCCCTCCTTGTCCTGGATCTT-TGTCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCA 19612 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | |||||| | || || |||| || || || || || ||||| Sbjct 19611 ACCTCGAGGGTGATAGTCTTCCCAGTCAAGGTCTTCACGAAAATCTGCAT 19562 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/214 (69%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| ||||| || || ||||| || | || || |||| ||| Sbjct 18858 ACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTCA 18799 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 |||||||| || ||||| || ||||| |||||||| | ||| | | || ||||| | Sbjct 18798 AGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGG 18739 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTT 39252 ||||| ||||| | | | ||| || ||| || || || | ||||| | Sbjct 18738 ATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCT---TTCGACTTCTAGAGTGATTGTC 18682 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || || || ||||| || ||||||||||||| Sbjct 18681 TTGCCGGTTAGGGTTTTCACGAAGATTTGCATCT 18648 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/221 (70%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||| ||| || || || ||||| || || || ||||| | || || || Sbjct 19548 CGCAACACCAGATGGAGGGTCGATTCCTTTTGAATGTTGTAGTCGGCCAACGTACGACCG 19489 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| || || |||||||| | | ||| ||||| | ||| | | ||| ||| Sbjct 19488 TCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGGGGGATACCCTCCTTG 19429 Query 39190 TCCATGATTTTCTGT-TTGAGCGTCGCCACCG-TATCGCTCGA---CTCCACGTCCACCG 39244 ||| ||| ||| ||| |||| ||| | || | | || ||| |||||| || | | Sbjct 19428 TCC-TGAATTTTTGTCTTGA-CGTTGTCAATGGTGTC---CGAGCTCTCCACCTCTAGAG 19374 Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| | ||||| |||| || || || |||||||||||| Sbjct 19373 TGATCGTCTTTCCTGTCAAAGTCTTCACGAAGATTTGCATC 19333 >seq16084 Length=201933 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || | ||| |||||||| || ||||| || ||||| || || || ||||| Sbjct 384 CCACCCCTGAGGCGCAACACCAAGTGAAGCGTTGATTCCTTTTGAATGTTGTAGTCGGCT 325 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||||||| | || || |||||||| |||||||| || || || || ||||| | || Sbjct 324 AGTGTTCGTCCATCTTCGAGCTGTTTTCCCGCAAAAATTAGCCGTTGTTGGTCTGGTGGA 265 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCAC 39236 | | ||| || ||| ||| || || | ||| | | | ||| || ||| || Sbjct 264 ATCCCCTCCTTATCCTGGATCTTAGACTTTA-CGTTGTCGATCGTGTCAGAGTTCTCTAC 206 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | |||||||||| || || |||||||||||||| Sbjct 205 CTCTAGGGTGATCGTCTTTCCCGTCAAAGTCTTGACAAAGATTTGCAT 158 >seq14446 Length=62709 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | || ||||||||||| || || ||| || || |||||||| || Sbjct 47584 CATGCCACCCCTGAGACGCAACACCAAATGGAGGGTCGACTCCTTCTGGATATTATAGTC 47643 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 || | || || |||| || |||||||| || ||||| || | | |||||||| || Sbjct 47644 TGCCAAAGTACGGCCGTCCTCGAGCTGTTTCCCGGCAAAGATCAACCTTTGCTGGTCTGG 47703 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGAC 39231 |||| | || ||| |||||| ||| || ||| |||| | | | ||| ||||| | Sbjct 47704 TGGG-ATGCCCTCCTTGTCCTGGATCTT-TGTCTTGACATTGTCAATCGTGTCGCTGCTC 47761 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || | || || | ||||| |||| || || |||||||| ||||| Sbjct 47762 TCAACCTCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 47814 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || || || || || || || || ||||| || ||| |||| || Sbjct 48062 ACCAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCG 48121 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| || || | ||||||||| |||||| | || || || ||| Sbjct 48122 AGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGG-ATGCCTTCCTTATCCTG 48180 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| |||| | | | || ||| ||| || || | |||||| | || Sbjct 48181 GATTTTGGTCTTGACATTGTCAATAGTGTCGGAACTCTCAACCTCGAGGGTGATAGTCTT 48240 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || |||| || || || ||||||||||||| Sbjct 48241 GCCAGTCAAAGTCTTTACGAAGATTTGCATCT 48272 >seq44944 Length=25146 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| || || ||| || || || || || ||||| || || || | Sbjct 20566 CGCAACACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCA 20625 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188 || || ||||| || |||||||| ||||| | |||||||| ||||||| | || || || Sbjct 20626 TCCTCGAGCTGCTTTCCCGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCT-TCCTT 20684 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| | | || | | ||| | | | ||| ||||| ||| || || | || | Sbjct 20685 GTCC-TGAATCTTCGTCTTAACGTTGTCAATCGTGTCGCTGCTCTCAACCTCAAGGGTAA 20743 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || |||| || ||||| ||||| ||||| Sbjct 20744 TGGTCTTGCCAGTCAAGGTCTTAACGAAGATCTGCAT 20780 >seq14479 Length=56811 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| || || ||| || || || || || ||||| || || || | Sbjct 50698 CGCAACACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCA 50757 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188 || || ||||| || |||||||| ||||| | |||||||| ||||||| | || || || Sbjct 50758 TCCTCGAGCTGCTTTCCCGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCT-TCCTT 50816 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| | | || | | ||| | | | ||| ||||| ||| || || | || | Sbjct 50817 GTCC-TGAATCTTCGTCTTAACGTTGTCAATCGTGTCGCTGCTCTCAACCTCAAGGGTAA 50875 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || |||| || ||||| ||||| ||||| Sbjct 50876 TGGTCTTGCCAGTCAAGGTCTTAACGAAGATCTGCAT 50912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429309560397344