Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq13853 102 7e-17
seq16084 98.7 9e-16
seq14446 95.1 1e-14
seq44944 93.3 4e-14
seq14479 93.3 4e-14
>seq13853
Length=43806
Score = 102 bits (112), Expect = 7e-17
Identities = 176/247 (71%), Gaps = 8/247 (3%)
Strand=Plus/Minus
Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100
|| ||||||| || || || | ||| || ||||||| ||| || || ||| ||||
Sbjct 9763 ACGAAAATTTG--CATACCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTT 9706
Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160
| || ||||| ||||| | ||| || | || || ||||| || || || || || | ||
Sbjct 9705 GAATGTTATAGTCGGCCAATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAAC 9646
Query 39161 GCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCG-CCA 39217
||||||||| ||||||| | || ||| |||||| ||| || ||| |||| ||| | | |
Sbjct 9645 GCTGCTGGTCCGGTGGG-ATGCCCTCCTTGTCCTGGATCTT-TGTCTTGA-CGTTGTCGA 9589
Query 39218 CCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277
|| ||||| ||| || || | ||||| | || ||||||| || || ||||| |
Sbjct 9588 TGGTGTCGCTGCTCTCAACCTCGAGAGTGATGGTCTTCCCCGTCAAGGTCTTTACAAAAA 9529
Query 39278 TTTGCAT 39284
| |||||
Sbjct 9528 TCTGCAT 9522
Score = 96.9 bits (106), Expect = 3e-15
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| || | ||| || ||||||| ||| || || ||| ||||| || ||||| |||||
Sbjct 19788 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 19729
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176
| ||| || | || || ||||| || || || || || | ||||||||||| |||||||
Sbjct 19728 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 19669
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCG-CCACCGTATCGCTCGACTCC 39234
| || ||| |||||| ||| || ||| |||| ||| | | | || ||||| |||
Sbjct 19668 -ATGCCCTCCTTGTCCTGGATCTT-TGTCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCA 19612
Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || | |||||| | || || |||| || || || || || |||||
Sbjct 19611 ACCTCGAGGGTGATAGTCTTCCCAGTCAAGGTCTTCACGAAAATCTGCAT 19562
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/214 (69%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || || ||| ||||| || || ||||| || | || || |||| |||
Sbjct 18858 ACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTCA 18799
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
|||||||| || ||||| || ||||| |||||||| | ||| | | || ||||| |
Sbjct 18798 AGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGG 18739
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTT 39252
||||| ||||| | | | ||| || ||| || || || | ||||| |
Sbjct 18738 ATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCT---TTCGACTTCTAGAGTGATTGTC 18682
Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|| || || || ||||| || |||||||||||||
Sbjct 18681 TTGCCGGTTAGGGTTTTCACGAAGATTTGCATCT 18648
Score = 84.2 bits (92), Expect = 2e-11
Identities = 155/221 (70%), Gaps = 10/221 (5%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| ||||||| ||| || || || ||||| || || || ||||| | || || ||
Sbjct 19548 CGCAACACCAGATGGAGGGTCGATTCCTTTTGAATGTTGTAGTCGGCCAACGTACGACCG 19489
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| || ||||| || || |||||||| | | ||| ||||| | ||| | | ||| |||
Sbjct 19488 TCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGGGGGATACCCTCCTTG 19429
Query 39190 TCCATGATTTTCTGT-TTGAGCGTCGCCACCG-TATCGCTCGA---CTCCACGTCCACCG 39244
||| ||| ||| ||| |||| ||| | || | | || ||| |||||| || | |
Sbjct 19428 TCC-TGAATTTTTGTCTTGA-CGTTGTCAATGGTGTC---CGAGCTCTCCACCTCTAGAG 19374
Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285
|||| | ||||| |||| || || || ||||||||||||
Sbjct 19373 TGATCGTCTTTCCTGTCAAAGTCTTCACGAAGATTTGCATC 19333
>seq16084
Length=201933
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| || || | ||| |||||||| || ||||| || ||||| || || || |||||
Sbjct 384 CCACCCCTGAGGCGCAACACCAAGTGAAGCGTTGATTCCTTTTGAATGTTGTAGTCGGCT 325
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
||||||||| | || || |||||||| |||||||| || || || || ||||| | ||
Sbjct 324 AGTGTTCGTCCATCTTCGAGCTGTTTTCCCGCAAAAATTAGCCGTTGTTGGTCTGGTGGA 265
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCAC 39236
| | ||| || ||| ||| || || | ||| | | | ||| || ||| ||
Sbjct 264 ATCCCCTCCTTATCCTGGATCTTAGACTTTA-CGTTGTCGATCGTGTCAGAGTTCTCTAC 206
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | ||||| | |||||||||| || || ||||||||||||||
Sbjct 205 CTCTAGGGTGATCGTCTTTCCCGTCAAAGTCTTGACAAAGATTTGCAT 158
>seq14446
Length=62709
Score = 95.1 bits (104), Expect = 1e-14
Identities = 164/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| || || | || ||||||||||| || || ||| || || |||||||| ||
Sbjct 47584 CATGCCACCCCTGAGACGCAACACCAAATGGAGGGTCGACTCCTTCTGGATATTATAGTC 47643
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172
|| | || || |||| || |||||||| || ||||| || | | |||||||| ||
Sbjct 47644 TGCCAAAGTACGGCCGTCCTCGAGCTGTTTCCCGGCAAAGATCAACCTTTGCTGGTCTGG 47703
Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGAC 39231
|||| | || ||| |||||| ||| || ||| |||| | | | ||| ||||| |
Sbjct 47704 TGGG-ATGCCCTCCTTGTCCTGGATCTT-TGTCTTGACATTGTCAATCGTGTCGCTGCTC 47761
Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || || | || || | ||||| |||| || || |||||||| |||||
Sbjct 47762 TCAACCTCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 47814
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/212 (69%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||||||| || || || || || || || || || ||||| || ||| |||| ||
Sbjct 48062 ACCAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCG 48121
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194
|||||||| || ||||| || || | ||||||||| |||||| | || || || |||
Sbjct 48122 AGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGG-ATGCCTTCCTTATCCTG 48180
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|||||| |||| | | | || ||| ||| || || | |||||| | ||
Sbjct 48181 GATTTTGGTCTTGACATTGTCAATAGTGTCGGAACTCTCAACCTCGAGGGTGATAGTCTT 48240
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|| |||| || || || |||||||||||||
Sbjct 48241 GCCAGTCAAAGTCTTTACGAAGATTTGCATCT 48272
>seq44944
Length=25146
Score = 93.3 bits (102), Expect = 4e-14
Identities = 154/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| ||||||||||| || || ||| || || || || || ||||| || || || |
Sbjct 20566 CGCAACACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCA 20625
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188
|| || ||||| || |||||||| ||||| | |||||||| ||||||| | || || ||
Sbjct 20626 TCCTCGAGCTGCTTTCCCGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCT-TCCTT 20684
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| ||| | | || | | ||| | | | ||| ||||| ||| || || | || |
Sbjct 20685 GTCC-TGAATCTTCGTCTTAACGTTGTCAATCGTGTCGCTGCTCTCAACCTCAAGGGTAA 20743
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| | || || |||| || ||||| ||||| |||||
Sbjct 20744 TGGTCTTGCCAGTCAAGGTCTTAACGAAGATCTGCAT 20780
>seq14479
Length=56811
Score = 93.3 bits (102), Expect = 4e-14
Identities = 154/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| ||||||||||| || || ||| || || || || || ||||| || || || |
Sbjct 50698 CGCAACACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCA 50757
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188
|| || ||||| || |||||||| ||||| | |||||||| ||||||| | || || ||
Sbjct 50758 TCCTCGAGCTGCTTTCCCGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCT-TCCTT 50816
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| ||| | | || | | ||| | | | ||| ||||| ||| || || | || |
Sbjct 50817 GTCC-TGAATCTTCGTCTTAACGTTGTCAATCGTGTCGCTGCTCTCAACCTCAAGGGTAA 50875
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| | || || |||| || ||||| ||||| |||||
Sbjct 50876 TGGTCTTGCCAGTCAAGGTCTTAACGAAGATCTGCAT 50912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429309560397344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |