Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq16048 127 2e-24 seq15946 125 6e-24 seq11586 125 6e-24 seq15936 82.4 7e-11 >seq16048 Length=246288 Score = 127 bits (140), Expect = 2e-24 Identities = 390/590 (66%), Gaps = 20/590 (3%) Strand=Plus/Minus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 |||| | ||| ||||| || || || | ||| ||||| | ||| ||||| || || | Sbjct 204521 ACAAAAGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGA 204462 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | ||||| || ||||| | || | ||||||||||||||| || ||| || ||||| Sbjct 204461 AGGTTAACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAG 204402 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC-CCGAACGAGCTGGCT 4718 |||||||||| || || || ||||| || | ||||| | | |||| | | Sbjct 204401 AAAAGAATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG---TCTCA 204346 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTT-AACGCACGGAATTGTGTA 4777 | | |||||| || ||||| | || || ||||| | |||| ||||| || | Sbjct 204345 GAACCATCAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTC 204287 Query 4778 TATAGCGTTAAATAATTT--ACTTTTTTCAA--ATGGGTCTTGAATATAAGTGTCTATTA 4833 | ||| ||| || || || ||||| | | || |||||||| || || | | Sbjct 204286 GACAGCACGAAACAAATTCGAC----TTCAACGACGAATCCTGAATATACGTCTCAAGCA 204231 Query 4834 GTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCAT 4892 || ||||| || ||||| ||||| || || ||||||||||| |||||||| ||| Sbjct 204230 AAAGCGAGTACATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCA- 204172 Query 4893 CTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATA 4952 | ||||| | | |||| || || || | | | ||| ||| || || Sbjct 204171 CGCGCTTCGGGGAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATC 204112 Query 4953 CCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTC-AGGCTT 5011 || ||| || ||||| || || | ||| |||| || || | |||| || | | Sbjct 204111 CCATCAGATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTC 204052 Query 5012 AAGTT--TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAAC 5069 ||| | || |||||| | || |||| | | ||| ||||||||| | ||||||||| Sbjct 204051 AAGGTCGTTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAAC 203992 Query 5070 GACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || ||||| ||||| |||||||| ||| || | || || ||||| || Sbjct 203991 GATGCTTCGGCTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGG 203942 >seq15946 Length=172941 Score = 125 bits (138), Expect = 6e-24 Identities = 391/592 (66%), Gaps = 24/592 (4%) Strand=Plus/Minus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 |||| | ||| ||||| || || || | ||| ||||| | ||| ||||| || || | Sbjct 58586 ACAAAAGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGA 58527 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | ||||| || ||||| | || | ||||||||||||||| || ||| || ||||| Sbjct 58526 AGGTTAACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAG 58467 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC-CCGAACGAGCTGGCT 4718 |||||||||| || || || ||||| || | ||||| | | |||| | | Sbjct 58466 AAAAGAATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG---TCTCA 58411 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTT-AACGCACGGAATTGTGTA 4777 | | |||||| || ||||| | || || ||||| | |||| ||||| || | Sbjct 58410 GAACCATCAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTC 58352 Query 4778 TATAGCGTTAAATAATTT--ACTTTTTTCAA--ATGGGTCTTGAATATAAGTGTCTATTA 4833 | ||| ||| || || || ||||| | | || |||||||| || || | | Sbjct 58351 GACAGCACGAAACAAATTCGAC----TTCAACGACGAATCCTGAATATACGTCTCAAGCA 58296 Query 4834 GTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCAT 4892 || ||||| || ||||| ||||| || || ||||||||||| |||||||| ||| Sbjct 58295 AAAGCGAGTACATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCA- 58237 Query 4893 CTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATA 4952 | ||||| | | |||| || || || | | | ||| ||| || || Sbjct 58236 CGCGCTTCGGGGAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATC 58177 Query 4953 CCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTC---GTCAGGC 5009 || ||| || ||||| || || | ||| |||| || || | |||| ||| | Sbjct 58176 CCATCAGATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTC--GG 58119 Query 5010 TTAAGTT--TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAA 5067 | ||| | || |||||| | || |||| | | ||| ||||||||| | ||||||| Sbjct 58118 TCAAGGTCGTTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAA 58059 Query 5068 ACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 |||| ||||| ||||| |||||||| ||| || | || || ||||| || Sbjct 58058 ACGATGCTTCGGCTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGG 58007 >seq11586 Length=26096 Score = 125 bits (138), Expect = 6e-24 Identities = 391/592 (66%), Gaps = 24/592 (4%) Strand=Plus/Minus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 |||| | ||| ||||| || || || | ||| ||||| | ||| ||||| || || | Sbjct 4344 ACAAAAGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGA 4285 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | ||||| || ||||| | || | ||||||||||||||| || ||| || ||||| Sbjct 4284 AGGTTAACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAG 4225 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC-CCGAACGAGCTGGCT 4718 |||||||||| || || || ||||| || | ||||| | | |||| | | Sbjct 4224 AAAAGAATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG---TCTCA 4169 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTT-AACGCACGGAATTGTGTA 4777 | | |||||| || ||||| | || || ||||| | |||| ||||| || | Sbjct 4168 GAACCATCAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTC 4110 Query 4778 TATAGCGTTAAATAATTT--ACTTTTTTCAA--ATGGGTCTTGAATATAAGTGTCTATTA 4833 | ||| ||| || || || ||||| | | || |||||||| || || | | Sbjct 4109 GACAGCACGAAACAAATTCGAC----TTCAACGACGAATCCTGAATATACGTCTCAAGCA 4054 Query 4834 GTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCAT 4892 || ||||| || ||||| ||||| || || ||||||||||| |||||||| ||| Sbjct 4053 AAAGCGAGTACATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCA- 3995 Query 4893 CTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATA 4952 | ||||| | | |||| || || || | | | ||| ||| || || Sbjct 3994 CGCGCTTCGGGGAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATC 3935 Query 4953 CCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTC---GTCAGGC 5009 || ||| || ||||| || || | ||| |||| || || | |||| ||| | Sbjct 3934 CCATCAGATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTC--GG 3877 Query 5010 TTAAGTT--TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAA 5067 | ||| | || |||||| | || |||| | | ||| ||||||||| | ||||||| Sbjct 3876 TCAAGGTCGTTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAA 3817 Query 5068 ACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 |||| ||||| ||||| |||||||| ||| || | || || ||||| || Sbjct 3816 ACGATGCTTCGGCTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGG 3765 >seq15936 Length=155017 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||||||||| || | |||||| || ||| ||| || ||||| || || || || Sbjct 23978 CAGGCAAAATCACAGTGTAGACCTTCATCCCTGGAAATAAGCTCGTTTGAGAATGTCAAA 23919 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 || ||||| || || ||||| |||||||||||||| || Sbjct 23918 CCTGGCATCAACCCCCTCTTCTTAAGCCAAAATATGGC 23881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426814931974304