Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 127 2e-24
seq15946 125 6e-24
seq11586 125 6e-24
seq15936 82.4 7e-11
>seq16048
Length=246288
Score = 127 bits (140), Expect = 2e-24
Identities = 390/590 (66%), Gaps = 20/590 (3%)
Strand=Plus/Minus
Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599
|||| | ||| ||||| || || || | ||| ||||| | ||| ||||| || || |
Sbjct 204521 ACAAAAGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGA 204462
Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659
| ||||| || ||||| | || | ||||||||||||||| || ||| || |||||
Sbjct 204461 AGGTTAACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAG 204402
Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC-CCGAACGAGCTGGCT 4718
|||||||||| || || || ||||| || | ||||| | | |||| | |
Sbjct 204401 AAAAGAATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG---TCTCA 204346
Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTT-AACGCACGGAATTGTGTA 4777
| | |||||| || ||||| | || || ||||| | |||| ||||| || |
Sbjct 204345 GAACCATCAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTC 204287
Query 4778 TATAGCGTTAAATAATTT--ACTTTTTTCAA--ATGGGTCTTGAATATAAGTGTCTATTA 4833
| ||| ||| || || || ||||| | | || |||||||| || || | |
Sbjct 204286 GACAGCACGAAACAAATTCGAC----TTCAACGACGAATCCTGAATATACGTCTCAAGCA 204231
Query 4834 GTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCAT 4892
|| ||||| || ||||| ||||| || || ||||||||||| |||||||| |||
Sbjct 204230 AAAGCGAGTACATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCA- 204172
Query 4893 CTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATA 4952
| ||||| | | |||| || || || | | | ||| ||| || ||
Sbjct 204171 CGCGCTTCGGGGAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATC 204112
Query 4953 CCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTC-AGGCTT 5011
|| ||| || ||||| || || | ||| |||| || || | |||| || | |
Sbjct 204111 CCATCAGATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTC 204052
Query 5012 AAGTT--TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAAC 5069
||| | || |||||| | || |||| | | ||| ||||||||| | |||||||||
Sbjct 204051 AAGGTCGTTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAAC 203992
Query 5070 GACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119
|| ||||| ||||| |||||||| ||| || | || || ||||| ||
Sbjct 203991 GATGCTTCGGCTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGG 203942
>seq15946
Length=172941
Score = 125 bits (138), Expect = 6e-24
Identities = 391/592 (66%), Gaps = 24/592 (4%)
Strand=Plus/Minus
Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599
|||| | ||| ||||| || || || | ||| ||||| | ||| ||||| || || |
Sbjct 58586 ACAAAAGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGA 58527
Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659
| ||||| || ||||| | || | ||||||||||||||| || ||| || |||||
Sbjct 58526 AGGTTAACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAG 58467
Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC-CCGAACGAGCTGGCT 4718
|||||||||| || || || ||||| || | ||||| | | |||| | |
Sbjct 58466 AAAAGAATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG---TCTCA 58411
Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTT-AACGCACGGAATTGTGTA 4777
| | |||||| || ||||| | || || ||||| | |||| ||||| || |
Sbjct 58410 GAACCATCAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTC 58352
Query 4778 TATAGCGTTAAATAATTT--ACTTTTTTCAA--ATGGGTCTTGAATATAAGTGTCTATTA 4833
| ||| ||| || || || ||||| | | || |||||||| || || | |
Sbjct 58351 GACAGCACGAAACAAATTCGAC----TTCAACGACGAATCCTGAATATACGTCTCAAGCA 58296
Query 4834 GTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCAT 4892
|| ||||| || ||||| ||||| || || ||||||||||| |||||||| |||
Sbjct 58295 AAAGCGAGTACATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCA- 58237
Query 4893 CTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATA 4952
| ||||| | | |||| || || || | | | ||| ||| || ||
Sbjct 58236 CGCGCTTCGGGGAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATC 58177
Query 4953 CCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTC---GTCAGGC 5009
|| ||| || ||||| || || | ||| |||| || || | |||| ||| |
Sbjct 58176 CCATCAGATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTC--GG 58119
Query 5010 TTAAGTT--TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAA 5067
| ||| | || |||||| | || |||| | | ||| ||||||||| | |||||||
Sbjct 58118 TCAAGGTCGTTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAA 58059
Query 5068 ACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119
|||| ||||| ||||| |||||||| ||| || | || || ||||| ||
Sbjct 58058 ACGATGCTTCGGCTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGG 58007
>seq11586
Length=26096
Score = 125 bits (138), Expect = 6e-24
Identities = 391/592 (66%), Gaps = 24/592 (4%)
Strand=Plus/Minus
Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599
|||| | ||| ||||| || || || | ||| ||||| | ||| ||||| || || |
Sbjct 4344 ACAAAAGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGA 4285
Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659
| ||||| || ||||| | || | ||||||||||||||| || ||| || |||||
Sbjct 4284 AGGTTAACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAG 4225
Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC-CCGAACGAGCTGGCT 4718
|||||||||| || || || ||||| || | ||||| | | |||| | |
Sbjct 4224 AAAAGAATATCCCCTCGACACACGCAAAAGCGA-TAATCCTCTCAGCAAACG---TCTCA 4169
Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTT-AACGCACGGAATTGTGTA 4777
| | |||||| || ||||| | || || ||||| | |||| ||||| || |
Sbjct 4168 GAACCATCAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTC 4110
Query 4778 TATAGCGTTAAATAATTT--ACTTTTTTCAA--ATGGGTCTTGAATATAAGTGTCTATTA 4833
| ||| ||| || || || ||||| | | || |||||||| || || | |
Sbjct 4109 GACAGCACGAAACAAATTCGAC----TTCAACGACGAATCCTGAATATACGTCTCAAGCA 4054
Query 4834 GTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCAT 4892
|| ||||| || ||||| ||||| || || ||||||||||| |||||||| |||
Sbjct 4053 AAAGCGAGTACATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCA- 3995
Query 4893 CTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATA 4952
| ||||| | | |||| || || || | | | ||| ||| || ||
Sbjct 3994 CGCGCTTCGGGGAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATC 3935
Query 4953 CCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTC---GTCAGGC 5009
|| ||| || ||||| || || | ||| |||| || || | |||| ||| |
Sbjct 3934 CCATCAGATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTC--GG 3877
Query 5010 TTAAGTT--TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAA 5067
| ||| | || |||||| | || |||| | | ||| ||||||||| | |||||||
Sbjct 3876 TCAAGGTCGTTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAA 3817
Query 5068 ACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119
|||| ||||| ||||| |||||||| ||| || | || || ||||| ||
Sbjct 3816 ACGATGCTTCGGCTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGG 3765
>seq15936
Length=155017
Score = 82.4 bits (90), Expect = 7e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607
|| ||||||||||| || | |||||| || ||| ||| || ||||| || || || ||
Sbjct 23978 CAGGCAAAATCACAGTGTAGACCTTCATCCCTGGAAATAAGCTCGTTTGAGAATGTCAAA 23919
Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645
|| ||||| || || ||||| |||||||||||||| ||
Sbjct 23918 CCTGGCATCAACCCCCTCTTCTTAAGCCAAAATATGGC 23881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426814931974304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |