Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq15946 176 6e-39 seq11586 176 6e-39 seq16048 174 2e-38 seq16271 114 2e-20 seq16162 95.1 2e-14 >seq15946 Length=172941 Score = 176 bits (194), Expect = 6e-39 Identities = 394/584 (67%), Gaps = 11/584 (2%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || || |||||||| || || | | ||| | ||| || || || || | Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| |||||||| ||||| |||||||| || || |||| ||||||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 58460 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317 ||| || || || |||||| ||| ||| || ||||| | || | || | | Sbjct 58459 TATCCCCTCGACACACGCAAAAGCGATAA-TC-CTCTCAGCAAACGTCTCAGAACCATCA 58402 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || |||||||| ||||||||||| || ||| || || || | |||| | Sbjct 58401 ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGA 58342 Query 48378 AAGAGAAAGtttttttCATTGCT--ATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 || | || | |||| | ||| | || || || || | ||||| |||| Sbjct 58341 AACA--AATTCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACA 58284 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | || || |||||||| ||||| || |||||||| |||||||| | |||||| | || Sbjct 58283 TCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGA 58224 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||| | |||| | || || || | ||||| || || |||||| || | Sbjct 58223 GCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGG 58164 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA-GTTTATT--CC 48612 |||| || || | || || | || |||| ||| ||| |||| | | || || Sbjct 58163 CAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACC 58104 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 ||| | | |||| ||| | ||| ||||||||||| |||||||| ||||| || |||| Sbjct 58103 AGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTT 58044 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 | || ||||| | ||| || | ||| || |||||||| ||| Sbjct 58043 TCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 58000 >seq11586 Length=26096 Score = 176 bits (194), Expect = 6e-39 Identities = 394/584 (67%), Gaps = 11/584 (2%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || || |||||||| || || | | ||| | ||| || || || || | Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| |||||||| ||||| |||||||| || || |||| ||||||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 4218 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317 ||| || || || |||||| ||| ||| || ||||| | || | || | | Sbjct 4217 TATCCCCTCGACACACGCAAAAGCGATAA-TC-CTCTCAGCAAACGTCTCAGAACCATCA 4160 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || |||||||| ||||||||||| || ||| || || || | |||| | Sbjct 4159 ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGA 4100 Query 48378 AAGAGAAAGtttttttCATTGCT--ATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 || | || | |||| | ||| | || || || || | ||||| |||| Sbjct 4099 AACA--AATTCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACA 4042 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | || || |||||||| ||||| || |||||||| |||||||| | |||||| | || Sbjct 4041 TCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGA 3982 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||| | |||| | || || || | ||||| || || |||||| || | Sbjct 3981 GCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGG 3922 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA-GTTTATT--CC 48612 |||| || || | || || | || |||| ||| ||| |||| | | || || Sbjct 3921 CAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACC 3862 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 ||| | | |||| ||| | ||| ||||||||||| |||||||| ||||| || |||| Sbjct 3861 AGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTT 3802 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 | || ||||| | ||| || | ||| || |||||||| ||| Sbjct 3801 TCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 3758 >seq16048 Length=246288 Score = 174 bits (192), Expect = 2e-38 Identities = 395/586 (67%), Gaps = 15/586 (3%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || || |||||||| || || | | ||| | ||| || || || || | Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| |||||||| ||||| |||||||| || || |||| ||||||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 204395 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317 ||| || || || |||||| ||| ||| || ||||| | || | || | | Sbjct 204394 TATCCCCTCGACACACGCAAAAGCGATAA-TC-CTCTCAGCAAACGTCTCAGAACCATCA 204337 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || |||||||| ||||||||||| || ||| || || || | |||| | Sbjct 204336 ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGA 204277 Query 48378 AAGAGAAAGtttttttCATTG--CTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 | | ||| | |||| | ||| | || || || || | ||||| |||| Sbjct 204276 A--ACAAATTCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACA 204219 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | || || |||||||| ||||| || |||||||| |||||||| | |||||| | || Sbjct 204218 TCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGA 204159 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||| | |||| | || || || | ||||| || || |||||| || | Sbjct 204158 GCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGG 204099 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAAT---ATTTTTCGTTGG--AAGTCAGTTTATT 48610 |||| || || | || || | || |||| || |||| || ||| ||| | Sbjct 204098 CAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTCAAGGTCGTTGA-- 204041 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||||| | | |||| ||| | ||| ||||||||||| |||||||| ||||| || || Sbjct 204040 CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGC 203981 Query 48671 TTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 ||| || ||||| | ||| || | ||| || |||||||| ||| Sbjct 203980 TTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 203935 >seq16271 Length=354655 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||||| ||||||| ||| | || | || ||| ||| |||| || Sbjct 278736 CCTCCTTGATCAACATATCGAGCGGTGTCATTGAACACCCGCAGCATCGGAGTAATGCCA 278795 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || |||| ||||||||| ||| ||| ||||| || | || |||||||| ||| || Sbjct 278796 TTTGATGCTCCATTTGTGCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAATAGAG 278855 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || ||| ||| | ||| || |||||||||||||| || Sbjct 278856 ACACCAATACCTCCAGCAGATTTACTTATAACAGCACATTCCTTCAATGTATCGTAAATG 278915 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || ||||| || ||||| | ||| || ||||| Sbjct 278916 CCCTCGATGCTGTCCTCTTTCATGCAGATAAGGAAGCAGCT 278956 >seq16162 Length=245457 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | ||||| || ||||| || ||||| | | ||| | | || | Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||| || || || || || || | ||| || || || || || | ||||||| Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 ||||||||||| || || || ||| | | | ||||||| || ||| | || | Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| ||||||||||| | || |||||| | |||||||| || Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694277284664320