Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq16048 159 5e-34 seq15946 154 2e-32 seq11586 154 2e-32 seq16271 111 2e-19 seq16162 95.1 2e-14 >seq16048 Length=246288 Score = 159 bits (176), Expect = 5e-34 Identities = 373/557 (67%), Gaps = 7/557 (1%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||| || || ||||| || || || | | ||| | ||| || || || || | Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 ||| ||||| |||||||||||||| |||||||| || || |||| ||||||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 204395 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 ||| || || ||| ||| || |||| || ||||| | | | || | || ||| Sbjct 204394 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTCAGAACCATCAAT 204335 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 ||| | |||||||| ||||| ||||| || ||| || || || | |||| || Sbjct 204334 CCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGAA- 204276 Query 46869 GAGAAAGtttttttCATC-AC-TATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 | ||| | |||| | || ||| | || ||| || || | ||||| ||||| Sbjct 204275 -ACAAATTCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACATC 204217 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || |||||||| || ||||| || |||||||| |||||||| | ||||| | | | Sbjct 204216 TCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAGC 204157 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || | ||| | || || | | ||||| || || |||||| || ||| Sbjct 204156 TGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGCA 204097 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC-AGTTTATT--CCAG 47103 || || || | || || | || |||| ||||||| ||| || | || |||| Sbjct 204096 AAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTCAAGGTCGTTGACCAG 204037 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 | | | |||| ||| | ||| ||||||||||| ||||| || || || || ||||| Sbjct 204036 TGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTC 203977 Query 47164 TTATACATATTCCATAT 47180 || ||||| | ||| || Sbjct 203976 TTGTACATTTCCCAGAT 203960 >seq15946 Length=172941 Score = 154 bits (170), Expect = 2e-32 Identities = 372/557 (67%), Gaps = 7/557 (1%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||| || || ||||| || || || | | ||| | ||| || || || || | Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 ||| ||||| |||||||||||||| |||||||| || || |||| ||||||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 58460 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 ||| || || ||| ||| || |||| || ||||| | | | || | || ||| Sbjct 58459 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTCAGAACCATCAAT 58400 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 ||| | |||||||| ||||| ||||| || ||| || || || | |||| || Sbjct 58399 CCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGAA- 58341 Query 46869 GAGAAAGtttttttCATC-AC-TATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 | ||| | |||| | || ||| | || ||| || || | ||||| ||||| Sbjct 58340 -ACAAATTCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACATC 58282 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || |||||||| || ||||| || |||||||| |||||||| | ||||| | | | Sbjct 58281 TCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAGC 58222 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || | ||| | || || | | ||||| || || |||||| || ||| Sbjct 58221 TGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGCA 58162 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC-AGTTTATT--CCAG 47103 || || || | || || | || |||| ||||| | ||| || | || |||| Sbjct 58161 AAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCAG 58102 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 | | | |||| ||| | ||| ||||||||||| ||||| || || || || ||||| Sbjct 58101 TGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTC 58042 Query 47164 TTATACATATTCCATAT 47180 || ||||| | ||| || Sbjct 58041 TTGTACATTTCCCAGAT 58025 >seq11586 Length=26096 Score = 154 bits (170), Expect = 2e-32 Identities = 372/557 (67%), Gaps = 7/557 (1%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||| || || ||||| || || || | | ||| | ||| || || || || | Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 ||| ||||| |||||||||||||| |||||||| || || |||| ||||||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAA 4218 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 ||| || || ||| ||| || |||| || ||||| | | | || | || ||| Sbjct 4217 TATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTCAGAACCATCAAT 4158 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 ||| | |||||||| ||||| ||||| || ||| || || || | |||| || Sbjct 4157 CCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACGAA- 4099 Query 46869 GAGAAAGtttttttCATC-AC-TATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 | ||| | |||| | || ||| | || ||| || || | ||||| ||||| Sbjct 4098 -ACAAATTCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTACATC 4040 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || |||||||| || ||||| || |||||||| |||||||| | ||||| | | | Sbjct 4039 TCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAGC 3980 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || | ||| | || || | | ||||| || || |||||| || ||| Sbjct 3979 TGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGCA 3920 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC-AGTTTATT--CCAG 47103 || || || | || || | || |||| ||||| | ||| || | || |||| Sbjct 3919 AAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCAG 3860 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 | | | |||| ||| | ||| ||||||||||| ||||| || || || || ||||| Sbjct 3859 TGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTC 3800 Query 47164 TTATACATATTCCATAT 47180 || ||||| | ||| || Sbjct 3799 TTGTACATTTCCCAGAT 3783 >seq16271 Length=354655 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||||| || |||| ||| | || | || ||| ||| ||||||| Sbjct 278736 CCTCCTTGATCAACATATCGAGCGGTGTCATTGAACACCCGCAGCATCGGAGTAATGCCA 278795 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || |||| |||||||| ||| ||| ||||| || ||||||||||| |||||| Sbjct 278796 TTTGATGCTCCATTTGTGCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAATAGAG 278855 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || |||| || | |||||| |||||||| || || ||| Sbjct 278856 ACACCAATACCTCCAGCAGATTTACTTATAACAGCACATTCCTTCAATGTATCGTAAATG 278915 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || || || ||||| | ||| || ||||| Sbjct 278916 CCCTCGATGCTGTCCTCTTTCATGCAGATAAGGAAGCAGCT 278956 >seq16162 Length=245457 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || || || |||||||||||||| | | ||| | | || | Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||| || | | || ||||| | ||| || || || || || | ||||||| Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 ||||||||||| | || ||| ||| | | | ||||||| || ||| | || | Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| ||||||||||| | || |||||| | |||||||| || Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712532590172160