Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_031235.1
Length=194437
Score E
Sequences producing significant alignments: (Bits) Value
seq11475 450 2e-121
seq15224 275 8e-69
seq10333 131 2e-25
>seq11475
Length=22225
Score = 450 bits (498), Expect = 2e-121
Identities = 706/1005 (70%), Gaps = 4/1005 (0%)
Strand=Plus/Minus
Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030
||||||||||| | | ||||| || || ||||| || |||||||| || | || |
Sbjct 12873 TGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 12814
Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090
|||| ||||||| | || | || || ||| |||| || || |||||||| || |
Sbjct 12813 TTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTTTGTAACTTCAT 12754
Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149
||||||| || |||||||| ||| || | || || ||| ||||| | || |||||
Sbjct 12753 GGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGC-AATTTCTTAACCGCAGCC 12695
Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209
|| || ||||||||| | | | | || ||| | | | || ||||||||||| |
Sbjct 12694 GTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGGGTCCTGAAGCA 12635
Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269
||||| ||| | | || |||| ||| | || || || |||| |||||| || || ||
Sbjct 12634 CAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCAT 12575
Query 186270 GGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGG 186328
|| || || | || |||||||| ||| | || || || ||| | ||| ||| |
Sbjct 12574 GGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAA 12515
Query 186329 TATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATT 186388
| | || || || ||||| || || || || || || || ||||| |||||| ||||||
Sbjct 12514 T-TGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATT 12456
Query 186389 CCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGC 186448
||| || || || || || || || |||||||| || || ||||| || |||||
Sbjct 12455 CCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGC 12396
Query 186449 AATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCA 186508
|| ||| ||||| | | || | ||||| || || || |||||| |||| || || ||
Sbjct 12395 TATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGAACCCTTTTCA 12336
Query 186509 CATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTAC 186568
|||||||| || || ||| | | || | |||||||| | || || ||||||| |||
Sbjct 12335 TATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTAC 12276
Query 186569 TGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATAC 186628
|||||||||||| | | || ||||| || ||||| |||||| || || | |
Sbjct 12275 CGTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCC 12216
Query 186629 GACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTT 186688
|| |||| |||||||| ||||| |||||||| || ||| | || ||||| || || ||
Sbjct 12215 AACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTT 12156
Query 186689 CGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTAT 186748
|| |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || |
Sbjct 12155 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 12096
Query 186749 GGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGA 186808
||| | |||| | | |||| | | ||||| || | ||||| ||||| |||||
Sbjct 12095 CGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGA 12036
Query 186809 CTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAA 186868
||| || || || | | ||||| || |||||||| || ||||| ||||| |||||
Sbjct 12035 CTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAA 11976
Query 186869 GAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGA 186928
||||| || || ||||||||| | ||||| |||||||| | ||||| || |||||
Sbjct 11975 AAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 11916
Query 186929 AAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973
|||| || |||| ||||| || || | || | || ||||||||
Sbjct 11915 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 11871
>seq15224
Length=172684
Score = 275 bits (304), Expect = 8e-69
Identities = 298/395 (75%), Gaps = 0/395 (0%)
Strand=Plus/Plus
Query 183592 GCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTT 183651
|| || ||||| || || || || || ||| || ||||||| | |||||||| |||
Sbjct 89328 GCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTT 89387
Query 183652 AGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCA 183711
|||||||||||| | || || ||| || || |||| ||| |||| ||||| ||
Sbjct 89388 TCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCT 89447
Query 183712 GAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGT 183771
|||||||||||||| |||||||| || |||||| ||||||| |||||||| ||||| ||
Sbjct 89448 GAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGC 89507
Query 183772 TCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACT 183831
|| || || ||||| ||||| ||||| |||| ||||| || || | ||||||||
Sbjct 89508 TCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACA 89567
Query 183832 GAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATT 183891
|| ||| || || | ||||||| || |||||||| ||||| || || || ||
Sbjct 89568 GAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATC 89627
Query 183892 GTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCT 183951
|| |||||||||| || |||||||| |||||||||| |||||| || ||||||||
Sbjct 89628 GTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTTCAACAATTCC 89687
Query 183952 CGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGT 183986
|||||| | ||||||||| | ||||||||||| ||
Sbjct 89688 CGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722
Score = 167 bits (184), Expect = 3e-36
Identities = 146/182 (80%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912
||||||| || |||||||| ||||| || || || || || ||||||||||| || |||
Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793
Query 183913 GGTCGTCTGATCTTCCAGTAT------GCTTCGTTTAACAATTCTCGTTCTCTTCACTTC 183966
||||| |||||||||| ||| ||| || ||||||||||||||| | ||||||
Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853
Query 183967 TTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATG 184026
||| | ||||||||||| || ||||| || |||||||||||| | ||| |||||||||||
Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913
Query 184027 GC 184028
||
Sbjct 89914 GC 89915
Score = 105 bits (116), Expect = 8e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 183325 ATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCT 183384
|| || || || || ||||| ||| | || || || | || |||||||| || || |||
Sbjct 89156 ATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTTCT 89215
Query 183385 GGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGCA 183444
||||| || ||||| |||| || || || | || || ||||| || |||||||||
Sbjct 89216 GGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAGCA 89275
Query 183445 GCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTA 183482
||||| | ||||||||| | ||||| |||||||||||
Sbjct 89276 GCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTA 89313
>seq10333
Length=16991
Score = 131 bits (144), Expect = 2e-25
Identities = 161/220 (73%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 186540 GCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAA 186599
|||||||| | || || ||||||| ||| |||||||||||| | | || ||||| ||
Sbjct 6665 GCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAGGATGGTGAT 6724
Query 186600 CAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTC 186659
||||| |||||| || || | | || |||| |||||||| ||||| ||||||
Sbjct 6725 GGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 6784
Query 186660 ACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTT 186719
|| || ||| | || ||||| || || || || |||| ||| |||||| |||||| |
Sbjct 6785 ACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 6844
Query 186720 CATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGA 186759
|||||||| ||| | ||||| || || | ||| | ||||
Sbjct 6845 CATTTCTTTATGTTATTTGTACCAGTAACAGGTTTATGGA 6884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621719801122560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |