Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq11475 450 2e-121 seq15224 275 8e-69 seq10333 131 2e-25 >seq11475 Length=22225 Score = 450 bits (498), Expect = 2e-121 Identities = 706/1005 (70%), Gaps = 4/1005 (0%) Strand=Plus/Minus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | ||||| || || ||||| || |||||||| || | || | Sbjct 12873 TGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 12814 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||||||| | || | || || ||| |||| || || |||||||| || | Sbjct 12813 TTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTTTGTAACTTCAT 12754 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149 ||||||| || |||||||| ||| || | || || ||| ||||| | || ||||| Sbjct 12753 GGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGC-AATTTCTTAACCGCAGCC 12695 Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209 || || ||||||||| | | | | || ||| | | | || ||||||||||| | Sbjct 12694 GTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGGGTCCTGAAGCA 12635 Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269 ||||| ||| | | || |||| ||| | || || || |||| |||||| || || || Sbjct 12634 CAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCAT 12575 Query 186270 GGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGG 186328 || || || | || |||||||| ||| | || || || ||| | ||| ||| | Sbjct 12574 GGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAA 12515 Query 186329 TATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATT 186388 | | || || || ||||| || || || || || || || ||||| |||||| |||||| Sbjct 12514 T-TGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATT 12456 Query 186389 CCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGC 186448 ||| || || || || || || || |||||||| || || ||||| || ||||| Sbjct 12455 CCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGC 12396 Query 186449 AATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCA 186508 || ||| ||||| | | || | ||||| || || || |||||| |||| || || || Sbjct 12395 TATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGAACCCTTTTCA 12336 Query 186509 CATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTAC 186568 |||||||| || || ||| | | || | |||||||| | || || ||||||| ||| Sbjct 12335 TATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTAC 12276 Query 186569 TGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATAC 186628 |||||||||||| | | || ||||| || ||||| |||||| || || | | Sbjct 12275 CGTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCC 12216 Query 186629 GACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTT 186688 || |||| |||||||| ||||| |||||||| || ||| | || ||||| || || || Sbjct 12215 AACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTT 12156 Query 186689 CGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTAT 186748 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 12155 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 12096 Query 186749 GGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGA 186808 ||| | |||| | | |||| | | ||||| || | ||||| ||||| ||||| Sbjct 12095 CGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGA 12036 Query 186809 CTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAA 186868 ||| || || || | | ||||| || |||||||| || ||||| ||||| ||||| Sbjct 12035 CTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAA 11976 Query 186869 GAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGA 186928 ||||| || || ||||||||| | ||||| |||||||| | ||||| || ||||| Sbjct 11975 AAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 11916 Query 186929 AAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 |||| || |||| ||||| || || | || | || |||||||| Sbjct 11915 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 11871 >seq15224 Length=172684 Score = 275 bits (304), Expect = 8e-69 Identities = 298/395 (75%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 183592 GCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTT 183651 || || ||||| || || || || || ||| || ||||||| | |||||||| ||| Sbjct 89328 GCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTT 89387 Query 183652 AGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCA 183711 |||||||||||| | || || ||| || || |||| ||| |||| ||||| || Sbjct 89388 TCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCT 89447 Query 183712 GAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGT 183771 |||||||||||||| |||||||| || |||||| ||||||| |||||||| ||||| || Sbjct 89448 GAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGC 89507 Query 183772 TCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACT 183831 || || || ||||| ||||| ||||| |||| ||||| || || | |||||||| Sbjct 89508 TCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACA 89567 Query 183832 GAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATT 183891 || ||| || || | ||||||| || |||||||| ||||| || || || || Sbjct 89568 GAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATC 89627 Query 183892 GTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCT 183951 || |||||||||| || |||||||| |||||||||| |||||| || |||||||| Sbjct 89628 GTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTTCAACAATTCC 89687 Query 183952 CGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGT 183986 |||||| | ||||||||| | ||||||||||| || Sbjct 89688 CGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722 Score = 167 bits (184), Expect = 3e-36 Identities = 146/182 (80%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 ||||||| || |||||||| ||||| || || || || || ||||||||||| || ||| Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 183913 GGTCGTCTGATCTTCCAGTAT------GCTTCGTTTAACAATTCTCGTTCTCTTCACTTC 183966 ||||| |||||||||| ||| ||| || ||||||||||||||| | |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 183967 TTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATG 184026 ||| | ||||||||||| || ||||| || |||||||||||| | ||| ||||||||||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 184027 GC 184028 || Sbjct 89914 GC 89915 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 183325 ATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCT 183384 || || || || || ||||| ||| | || || || | || |||||||| || || ||| Sbjct 89156 ATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTTCT 89215 Query 183385 GGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGCA 183444 ||||| || ||||| |||| || || || | || || ||||| || ||||||||| Sbjct 89216 GGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAGCA 89275 Query 183445 GCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTA 183482 ||||| | ||||||||| | ||||| ||||||||||| Sbjct 89276 GCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTA 89313 >seq10333 Length=16991 Score = 131 bits (144), Expect = 2e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 186540 GCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAA 186599 |||||||| | || || ||||||| ||| |||||||||||| | | || ||||| || Sbjct 6665 GCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAGGATGGTGAT 6724 Query 186600 CAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTC 186659 ||||| |||||| || || | | || |||| |||||||| ||||| |||||| Sbjct 6725 GGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 6784 Query 186660 ACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTT 186719 || || ||| | || ||||| || || || || |||| ||| |||||| |||||| | Sbjct 6785 ACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 6844 Query 186720 CATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGA 186759 |||||||| ||| | ||||| || || | ||| | |||| Sbjct 6845 CATTTCTTTATGTTATTTGTACCAGTAACAGGTTTATGGA 6884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621719801122560