Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq44944 84.2 2e-11 seq14479 84.2 2e-11 seq14446 84.2 2e-11 >seq44944 Length=25146 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || || || || ||||| ||||| ||||||||| | || || |||| Sbjct 20780 ATGCAGATCTTCGTTAAGACCTTGACTGGCAAGACCATTACCCTTGAGGTTGAGAGCAGC 20721 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111218 || | ||| | | || || || ||| ||||| ||||| | |||| || | || Sbjct 20720 GACACGATTGACAACGTTAAGACGAAGATTCAGGACAAGGAAGG-GATCCCACCGGACCA 20662 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || |||||||| | |||||| || || | || ||| | || ||||||| || || Sbjct 20661 GCAGAGGCTTATCTTTGCGGGAAAGCAGCTCGAGGATGGTCGCACCCTGGCCGACTACAA 20602 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || || || || ||||| ||||||||||| | ||||| Sbjct 20601 CATCCAGAAGGAGTCGACTCTCCATTTGGTGTTGCGTCTCAGGGGTGG 20554 >seq14479 Length=56811 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || || || || ||||| ||||| ||||||||| | || || |||| Sbjct 50912 ATGCAGATCTTCGTTAAGACCTTGACTGGCAAGACCATTACCCTTGAGGTTGAGAGCAGC 50853 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111218 || | ||| | | || || || ||| ||||| ||||| | |||| || | || Sbjct 50852 GACACGATTGACAACGTTAAGACGAAGATTCAGGACAAGGAAGG-GATCCCACCGGACCA 50794 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || |||||||| | |||||| || || | || ||| | || ||||||| || || Sbjct 50793 GCAGAGGCTTATCTTTGCGGGAAAGCAGCTCGAGGATGGTCGCACCCTGGCCGACTACAA 50734 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || || || || ||||| ||||||||||| | ||||| Sbjct 50733 CATCCAGAAGGAGTCGACTCTCCATTTGGTGTTGCGTCTCAGGGGTGG 50686 >seq14446 Length=62709 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || |||||||| || ||||| || || ||||||||| | || || |||| Sbjct 47814 ATGCAGATCTTTGTCAAGACCTTGACTGGAAAGACCATTACCCTTGAGGTTGAGAGCAGC 47755 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | | || || ||| || ||||| || ||| | || || || Sbjct 47754 GACACGATTGACAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAG 47695 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||| | || | ||| || ||||| | || || ||| |||| || |||||| Sbjct 47694 CAAAGGTTGATCTTTGCCGGGAAACAGCTCGAGGACGGCCGTACTTTGGCAGACTATAAT 47635 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || || ||||| ||||||||||| | ||||||| Sbjct 47634 ATCCAGAAGGAGTCGACCCTCCATTTGGTGTTGCGTCTCAGGGGTGGCA 47586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421579410527488