Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq11475 511 6e-140 seq15224 257 2e-63 seq8938 179 4e-40 seq10333 159 4e-34 seq15824 107 2e-18 seq15982 98.7 1e-15 seq12771 87.8 2e-12 >seq11475 Length=22225 Score = 511 bits (566), Expect = 6e-140 Identities = 725/1013 (72%), Gaps = 10/1013 (1%) Strand=Plus/Minus Query 170605 TGGATGACTGGCTTAAACGT---GATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTC 170661 ||||||||||| | |||| || || || || ||||| || |||||||| || | | Sbjct 12873 TGGATGACTGGTT---ACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGC 12817 Query 170662 TTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAA 170721 | ||||| ||||||| | || | || || ||| |||| || ||||| ||||| || Sbjct 12816 TCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTTTGTAACTT 12757 Query 170722 GTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTTCCTTACAGCG 170780 ||||| || || || | || ||||| || | ||||| ||| |||||| | || || Sbjct 12756 CATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGC-AATTTCTTAACCGCA 12698 Query 170781 GCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 170840 || || || || |||||| || | | | || ||| | | | || ||||||||||| Sbjct 12697 GCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGGGTCCTGAA 12638 Query 170841 TCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTC 170900 | || || ||||| || |||| ||| | || || || |||| |||||| || || Sbjct 12637 GCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTT 12578 Query 170901 CACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGT 170959 || || || || | || |||||||| ||| | || || || ||| | ||| ||| || Sbjct 12577 CATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCT-GT 12519 Query 170960 AGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGT 171019 | | || || |||||||| || ||||| || || || ||||| ||||| || Sbjct 12518 TCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGT 12459 Query 171020 GTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGC 171079 ||||| || ||||| || || || || |||||||||| || ||| ||||| || || Sbjct 12458 ATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGC 12399 Query 171080 AGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATT 171139 ||| || || || ||| | ||||| | ||||| || || || ||||| ||||| || || Sbjct 12398 AGCTATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGAACCCTTT 12339 Query 171140 TCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGT 171199 |||||||||||| ||||| ||| | | |||| || |||| | || |||||||||| Sbjct 12338 TCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGC 12279 Query 171200 TACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGA 171259 ||| ||||| |||||||| | || ||||||||| ||||| || || ||| ||| | Sbjct 12278 TACCGTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAA 12219 Query 171260 CACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGAT 171319 | | ||||| | ||||| || ||||| |||||||| ||||| ||||| ||||| || || Sbjct 12218 CCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAAT 12159 Query 171320 TTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGT 171379 |||||| | || || |||||| |||||||| |||||||||||| | ||||| || || Sbjct 12158 TTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 12099 Query 171380 CATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTA 171439 | ||| | ||| | ||| ||| ||| | | ||||| || | || || | || || Sbjct 12098 AACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTA 12039 Query 171440 TGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATAC 171499 ||| ||||| || || | | ||||| |||||||| || || ||||| ||||| || Sbjct 12038 TGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACAC 11979 Query 171500 CAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACA 171559 ||| || || || || ||||||||| ||||||| |||||||| | ||| || || || Sbjct 11978 CAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCA 11919 Query 171560 TGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||||||| || | ||||| ||||| |||||||| ||||| || || |||| || Sbjct 11918 TGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 11866 >seq15224 Length=172684 Score = 257 bits (284), Expect = 2e-63 Identities = 300/405 (74%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 169738 TGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCA 169797 ||| || || ||||| ||||| || || | || |||||| || |||| || |||| || Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377 Query 169798 AGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGT 169857 ||| || ||||| | ||||||| | || || || || || || |||| |||| | || Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437 Query 169858 CTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGT 169917 ||||| ||||||||||||||||| |||||||| || |||||| | ||||| || || || Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497 Query 169918 GTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCG 169977 || || || || || ||||| || ||||| ||| | | || ||||| ||| | | | Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557 Query 169978 TGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 170037 |||||||| || || || || || | ||||||| || |||||||| ||||| || Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617 Query 170038 CTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 170097 || || ||||| || ||||| | ||| || ||||| ||||||||||||| ||| || Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677 Query 170098 CAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGT 170142 |||||| |||||||| | ||||||||| | || || ||||| || Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 170009 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTC 170068 ||||||| || |||||||| ||||| || || || ||||| || ||||| ||||| || Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 170069 GGTCGCCTGATCTTC------CAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTC 170122 ||||| |||||||| ||||| ||| |||||||| || ||||| | |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 170123 TTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATG 170182 ||| | || || ||||| || || || || ||||| || ||| | ||| | ||| ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 170183 GCG 170185 ||| Sbjct 89914 GCG 89916 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 169481 ATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCT 169540 || || || || || ||||| ||| | || ||||| | || || ||||| || || ||| Sbjct 89156 ATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTTCT 89215 Query 169541 GGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCA 169600 ||||| || | || |||| || || || | || || ||||| || ||||||||| Sbjct 89216 GGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAGCA 89275 Query 169601 GCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTT 169637 ||| | | ||||| ||||| || || |||||||||| Sbjct 89276 GCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312 >seq8938 Length=12132 Score = 179 bits (198), Expect = 4e-40 Identities = 234/323 (72%), Gaps = 2/323 (1%) Strand=Plus/Minus Query 171292 TCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGT 171351 |||| ||||| ||||| ||||| || ||||||| | || || |||||| |||||| Sbjct 2040 TCACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGT 1981 Query 171352 TGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTA 171411 | |||||||||||| | ||||| || || | | | | ||| | ||| ||| ||| | Sbjct 1980 TACATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAG 1921 Query 171412 TTGGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGG--AGGTCAGAGCAGC 171469 | ||||| || | || || | || ||||| ||||| || | | | | ||||| Sbjct 1920 TCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGC 1861 Query 171470 AGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCG 171529 |||||||| || || ||||| ||||| ||||| || || || || ||||||||| |||| Sbjct 1860 CGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCG 1801 Query 171530 TGCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCT 171589 ||| ||||||| | ||| || || ||||||||| || | ||||| ||||| ||||| Sbjct 1800 TGCTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCT 1741 Query 171590 ACCTCGTGGCAATGCACTTTGAT 171612 ||| ||||| || || |||| || Sbjct 1740 ACCCCGTGGAAACGCTCTTTAAT 1718 >seq10333 Length=16991 Score = 159 bits (176), Expect = 4e-34 Identities = 187/253 (74%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 171155 TGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATAC 171214 ||| ||| | | |||| || |||| | || |||||||||| ||| ||||| ||||| Sbjct 6646 TGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATAC 6705 Query 171215 TTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGA 171274 ||| | || ||||||||| ||||| || || ||| ||| || | ||||| | || Sbjct 6706 TTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGA 6765 Query 171275 AGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTT 171334 ||| || ||||| |||||||| ||||| ||||| ||||| || |||||||| | || || Sbjct 6766 AGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTT 6825 Query 171335 CAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGT 171394 |||||| |||||||| |||||||||||| | ||||| || || | ||| | ||| | Sbjct 6826 TTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACAGGTTTATGGAT 6885 Query 171395 CAGTAGTCTGGGG 171407 ||| ||| ||| Sbjct 6886 GAGTGCTCTTGGG 6898 >seq15824 Length=139560 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 170970 CCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATC 171029 || || |||||||| || ||||| || || || ||||| ||||| || ||||| || Sbjct 61298 CCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTAATT 61239 Query 171030 TATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTC 171089 ||||| || | || || |||||||||| || ||| ||||| || ||||| || || Sbjct 61238 TATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATTTTT 61179 Query 171090 CGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATG 171149 || ||| | || || | ||||| || || || ||||| | ||| | |||||||||||| Sbjct 61178 CGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACGCAGAACTCTTTTCATATGATG 61119 Query 171150 GG 171151 || Sbjct 61118 GG 61117 >seq15982 Length=164312 Score = 98.7 bits (108), Expect = 1e-15 Identities = 188/276 (68%), Gaps = 11/276 (4%) Strand=Plus/Plus Query 171346 GTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGG 171405 |||| || |||||||||||| ||||||| || | | ||| | ||| | ||| ||| | Sbjct 21387 GTTGATTACATTTCTTTATGTTGTTTGTACCAATAACCGGTTTATGGATGAGTGCTCTTG 21446 Query 171406 GGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAG 171465 | | | ||| | || | || || | || ||||| ||||| || || | | | Sbjct 21447 AGTTAGTCGGTTTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGATAAC-GTG 21505 Query 171466 CAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGG-- 171523 |||| |||||||| | || ||||| ||||| |||| || || || | |||||||| Sbjct 21506 CAGCTGAAGATCCTAAATTTGAGACTTTCTACACCAGAAATATTCT-CTCAATGAAGGTA 21564 Query 171524 -------TCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCC 171576 | ||||||| |||||||| | ||| || || ||||||||| || | |||| Sbjct 21565 TTCAGGTTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCC 21624 Query 171577 CAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 | ||| | | |||||| |||| || || |||| || Sbjct 21625 CTGAGAAGGCTCTACCCTGTGGAAACGCTCTTTAAT 21660 >seq12771 Length=31889 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/186 (71%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 170970 CCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATC 171029 || || |||||||| || ||||| || | || | ||| ||||| || ||||| || Sbjct 8555 CCTTATAATGCAATAGCATTCTCGGGCCAAATTGTTGTTTTTGTTTCTGTATTCCTAATT 8496 Query 171030 TATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGT-TGCAGCAA---T 171085 ||||| || | || || |||||||||| || ||| ||||| || || ||||| | Sbjct 8495 TATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTATGTAGCAACTAT 8436 Query 171086 CTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATAT 171145 || || | | | ||||| | | ||| || || || ||||| |||| || |||||||| Sbjct 8435 TTTTCGATCCATCCTCTTTTTTCGAGGGTTTCATAATTGGACGTTGAACCCTTTTCATAT 8376 Query 171146 GATGGG 171151 |||||| Sbjct 8375 GATGGG 8370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591864636981760