Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq29890 159 4e-34 seq938 118 1e-21 >seq29890 Length=111316 Score = 159 bits (176), Expect = 4e-34 Identities = 394/586 (67%), Gaps = 15/586 (3%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| ||||||||||| || || |||||||||||| ||| | ||||| || ||||| | Sbjct 72426 ACAGGCGAAGTCGCAGTGCAGCCCTTCGTCTCTGGAGATTAACTCGTTCGAGAAAGTCAG 72485 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG-AAAAGA 16319 || |||||| ||||| || || | ||||||||| | |||| | | ||| |||||| Sbjct 72486 TCCCGGCATTAGCCCTCGCTTTTTGAGCCAGAATATGG-AGCAGAAGCTTCCGGAAAAGA 72544 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC--ATCTTTATT 16377 ||||||| || ||| | || || || | || ||| ||||| ||| | | | | Sbjct 72545 ATATACCTTCGACACAAGCGAAGGCCACTATTCGCTCCGCAAACGACTCCGACCCCT--- 72601 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 ||| |||| | |||| | ||| || | || || || ||||| || || Sbjct 72602 -CGA-TCCAGCGGAGGGCCCACTTGGCCTTCGTCTCGATGCAGGGGATGGTTTCGATCGC 72659 Query 16438 CTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 | || | | | |||| | | | | ||| | || || || || | || | ||| Sbjct 72660 GTGGAAGAGCAGGT-TCTTCTCCGCGGA-ATCTTTGATGTAAGTTTCGAGCAAGAGGCTG 72717 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 ||||| || ||||| |||||||||||||| |||||||| || |||||| ||||||||| Sbjct 72718 TACATCTCGGAGTGGATGTTCTCTATGGCGATCTGAAAGCCGTAGAAGGCCCGAGCCTCC 72777 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | | || || ||| ||||| |||| |||||||| ||||| ||||| | Sbjct 72778 GAGACCTGGACCTCCTTCATGAATCGGCCCGCAAGGTTCTCCAATACGATGCCGTCGGAT 72837 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || || || || || | | ||| || ||||||| || ||||||| |||||| | | Sbjct 72838 GCGGCGAAGAAGGCGAGCACGTGTTTGATGAAATGCTTCTCGTCAGCAGTAAGAGCGTCC 72897 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735 || | | | ||| | ||| | ||| || || || | |||||| ||| || | || Sbjct 72898 CAGTGTCGGAGATCCTGGGACAAATCGACCTCCTCAGCCGTCCAGAAGGAGGCTTCGGCT 72957 Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTAT-GGGAA-ATAC 16779 || || ||||| | ||| || | | ||| ||||| ||||| |||| Sbjct 72958 TTCTTGTACATCTCCCAGATTTGAGGGTACTGTATCGGGAACATAC 73003 >seq938 Length=1173706 Score = 118 bits (130), Expect = 1e-21 Identities = 119/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || ||||||||||| || || || |||||||| ||| || ||||||||||||||| Sbjct 1020739 AGGCATGCGAAGTCGCAGTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAAAAGTT 1020798 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 || |||||||| || |||||||| ||||| ||||| || ||| || ||| || || Sbjct 1020799 AATCCTGGCATGAGGCCGCGTTTCTTCAACCAAAATATGGC-GCAGAAGCTCCCGGAGAA 1020857 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTA 16349 |||||| |||||||| | ||||| |||| || Sbjct 1020858 GAATATCCCCTCAACGCAAGCAAAGGCGAGTA 1020889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508846128024640