Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq35681 122 2e-23 >seq35681 Length=3718 Score = 122 bits (134), Expect = 2e-23 Identities = 495/764 (65%), Gaps = 22/764 (3%) Strand=Plus/Minus Query 2273 CACCAACTGGAACACGCCGAGGCCGAGGCCGGTTGCGTCAATGCCGATGTATTCGACGCT 2332 ||||| | |||||| ||| |||| |||||| ||| |||||||||| | |||| | Sbjct 790 CACCAGGTCGAACACCCCGTAACCGACGCCGGTAATGTCGATGCCGATGTGCTGGACGTT 731 Query 2333 GTATTTCTCGGTCAGTTTGCGGATGCCATCTGCCTGC-GCGGCAAAGTCCATGCCCTTCC 2391 | | |||| ||| || ||| | |||||| ||| || | | | ||| || Sbjct 730 GAAGCGCTCGCACAGCTTCTCGATCTGCTTTGCCTGATGCGTGAACGACG-TCCCCCGCC 672 Query 2392 ACTGGTGGCGCTCCAGCATGCGGAACTTGCCACCAGAAACCACCGGCGGCGCGAGCACGA 2451 | ||| |||||| || ||||||||||| || | ||| ||||| || | || | Sbjct 671 AGCTGTGCTTCTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAA 612 Query 2452 CGCACCCGGCGCTGTCGCCAGTGTGTGAC--GGGTCGTAGCCAATCCAGACGGGGCGAGA 2509 ||||| ||| ||||| | || ||| ||||| || || | |||||| ||||| Sbjct 611 CGCACGTCGCGTCGTCGC--GGGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGGTT 554 Query 2510 GCCGAACGGATGGTCGGCGAACGGGGCGAAGTCCTCCCATTCTTCCATCACGTCGACCAT 2569 | ||||||| | | | |||| || |||| |||| ||| || || | Sbjct 553 GTCGAACGGCCGCGGGCTGTCCGGGTCGTAGTCAGTCCATAGGCCCAAGTCG--GAATA- 497 Query 2570 GCAGCGCTGCAGCTCCTCGAACGGGAATACCGACGCTTTATCGTCGACAAACTCGCACAT 2629 |||||||| ||| || || | |||| | | | | ||||| |||| |||||| Sbjct 496 GCAGCGCTCCAGGTCGGTCAAGGCGAATGCAGCCTGGGTGCTGTCGATGAACTTGCACAT 437 Query 2630 AAACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTTTGAGTTGGTCGAGGTCGAACAG 2689 ||||| | || ||| ||| || || || | | || | || ||||||||||| Sbjct 436 GAACAGCTGTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAG 377 Query 2690 GGTGCAGCCACCGGCAAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGGCCATCGTC 2749 | ||||||| ||||| | |||||| | ||| |||| | || |||||||| || || Sbjct 376 GTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGG 317 Query 2750 GCAGAGCTGGCCACCGGCGAGC-GCGCGGTGACTGATGTCAATTTCGATGCGGTCGGCAA 2808 ||| | | ||| | || | |||| | ||| | || || ||| | | Sbjct 316 GCACAACGCGCCGGCATGGATCTGCGCTTCG-CTGG-GCCA----CGGCCCGGCCTTCTT 263 Query 2809 TACG-GCTGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCC 2867 | || ||| | ||| |||| |||||| | |||| | ||||| || ||||| Sbjct 262 TCCGCGCTTG--CTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTT 205 Query 2868 AGCGTTGAGGGTGTCGAAAAGTAGGTTGAGCGCAGATGCTTC-TGCGAGGCCATGCCCGA 2926 | || ||| || || |||||||| |||| | | | ||||||||||| | Sbjct 204 ACCGCGCTGGGCGTGGAGAAGTAGGTCAGGCGCCACTTTTGCATGCGAGGCCATCGCGCT 145 Query 2927 GGCGACTTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTC 2986 ||| || | |||||||||| ||||| ||||||||||| | ||| |||| || | || Sbjct 144 GGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTG 85 Query 2987 GCCGTTATGGCTCTGAGCCGTGTTGGAGTTGGTACCGAGAAAAA 3030 ||||| | |||||| ||||||||| ||| || ||||| ||| Sbjct 84 GCCGTGGTAGCTCTGCGCCGTGTTGCTGTTCGT--CGAGAGAAA 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97408256506464