Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq938 176 5e-39 seq21561 107 2e-18 >seq938 Length=1173706 Score = 176 bits (194), Expect = 5e-39 Identities = 394/588 (67%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| || |||||||| |||||||| |||||||||||||| |||| |||||||||| Sbjct 1020734 ACAACAGGCATGCGAAGTCGCAGTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAA 1020793 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 | || | ||| ||||| ||||| || || || | ||||||||||| |||| | | | || Sbjct 1020794 AAGTTAATCCTGGCATGAGGCCGCGTTTCTTCAACCAAAATATGG-CGCAGAAGCTCCCG 1020852 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA---CCGGCG 24302 || ||||| || || || || |||||||| | || | || || || ||| Sbjct 1020853 GAGAAGAATATCCCCTCAACGCAAGCAAAGGCGAGTAGCCGCTCGGCAAAAGATTCGGAT 1020912 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | ||| ||||| | | ||||| | ||||||||| | || || || | ||| || Sbjct 1020913 CCGTC---GATCCAACGTAGGGCCCACTTGGCCTTCTTCTCCACGCATGGGACTGTGTCA 1020969 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 ||||| ||||| | || || |||||| | ||||| || | || |||| Sbjct 1020970 ATAGCTCGGAAGAGGCGACTCTTCTCGGCCGAATCTTTGATGTATGTTTCGAGCAGAAGA 1021029 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || ||||| || || || ||||| || || || || || |||||||| || | ||| Sbjct 1021030 CTGTACATCTCGGAGTGGATGTTCTCGATTGCAATCTGGAATCCGTAAAACGCGCGCGCC 1021089 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 |||| || ||| |||||| | || | | |||| ||| || || || || || Sbjct 1021090 TCGGAAACCTGGACTTCTTTCATGAACCTGCCAGCTAGATTCTCCAAAACGATGCCATCG 1021149 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 24602 ||| ||||| || |||| |||||||| || |||| || || || | || || Sbjct 1021150 GAGGCAGCAAAGAAGGCCAGAACATGTTTGATGAAATGCTTCTCATCGGCAGTGAGGGCT 1021209 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 | ||| | || || | || | ||| || || || |||||||||| || || || Sbjct 1021210 TCCCAGTGGGCGAGGTCCTGCGACAAATCTACCTCCTCGGCTGTCCAAAAGGAAGCTTCG 1021269 Query 24663 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 ||||| || ||||| | ||| || | | | || | ||| || || ||| Sbjct 1021270 GCCTTCTTGTACATTTCCCAAATCTGAGGGTACTCAATGGGGAACATA 1021317 >seq21561 Length=15626 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | |||||| ||||| || ||||||||| | ||| | |||| Sbjct 4057 GTCCCGGCATTGAAAAGGGTAGGTGAAGCATGAGTAAACCATCGCTGAGACAACAGATGA 3998 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | || ||||| |||||||| | ||| ||||| || || || || | ||| || Sbjct 3997 TATGTTTTAATGGCTGAATCTATATCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 3939 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| || ||||| | ||| | || || | | ||| || |||| | Sbjct 3938 CATGTGCTGAGGCCTCTCAACAACCTTCCCTTGGATCTTTAAAAGGTAAGACCTTTCAAG 3879 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||||||||||||||| | || |||||||| || || || || Sbjct 3878 GGTTTTAAAACCAAAATAATCATAGTCAAAGTCTCTGTCATATATGAT 3831 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 53924 TCTCTTTCGTAT--AGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 ||||| || ||| |||||||| || ||||| || || |||||| || |||| | Sbjct 4957 TCTCTCTCATATCGAGTGTATAAGGTC--TCAAATTCATCACCCCAACAATCAGCCAACC 4900 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 ||||| | || | ||||| | ||||||||||| ||| | | | |||| || ||||| Sbjct 4899 CAGGAGACTCGTTTGGACAAAACAACGACCACTGTCCATTAGATTGGACTCTTTGCATAA 4840 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 | |||||||| | ||||||||| ||| |||||||||| | ||| ||||| Sbjct 4839 ATAGATCAGGCACCCAAAGAGCATAAAACAGATCTCTGGCACGATGCTCCTC 4788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590739989496960