Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq18673 131 3e-25 seq25453 123 4e-23 seq25458 122 1e-22 seq191313 105 1e-17 seq21126 95.1 2e-14 seq26997 87.8 3e-12 >seq18673 Length=525508 Score = 131 bits (144), Expect = 3e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || || ||||| ||||| ||| | ||| |||| ||| Sbjct 460919 ATGCAAATCTTTGTTAAGACCCTCACCGGCAAGACTATTACTCTCGAGGTTGAGAGCTCC 460860 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || ||||||||| |||||||||||||| || |||||||| Sbjct 460859 -GACACCATAGACAATGTGAAGGCGAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 460801 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || | |||||| | ||||| ||| ||||| || Sbjct 460800 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGACGAACTCTAGCGGATTACAA 460741 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || ||||| || ||| | || | ||| | ||| | || ||||| || Sbjct 460740 TATCCAGAAAGAGTCTACTCTCCACCTTGTTCTCCGTCTGCGCGGTGGAAT 460690 Score = 131 bits (144), Expect = 3e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| || || ||||| ||||| ||| | ||| |||| ||| Sbjct 462203 ATGCAAATATTTGTTAAGACCCTCACCGGCAAGACTATTACTCTCGAGGTTGAGAGCTCC 462144 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || ||||||||| |||||||||||||| || |||||||| Sbjct 462143 -GACACCATAGACAATGTGAAGGCGAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 462085 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || || || || || || | |||||| | ||||| ||| ||||| || Sbjct 462084 GCAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAGGATGGACGAACTCTAGCGGATTACAA 462025 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| |||||||| || || | || | ||| | ||| | || ||||| || Sbjct 462024 TATCCAAAAAGAGTCTACGCTCCACCTTGTTCTCCGTCTGCGTGGTGGAAT 461974 Score = 131 bits (144), Expect = 3e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| || || ||||| ||||| ||| | ||| |||| ||| Sbjct 499432 ATGCAAATATTTGTTAAGACCCTCACCGGCAAGACTATTACTCTCGAGGTTGAGAGCTCC 499373 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || ||||||||| |||||||||||||| || |||||||| Sbjct 499372 -GACACCATAGACAATGTGAAGGCGAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 499314 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || || || || || || | |||||| | ||||| ||| ||||| || Sbjct 499313 GCAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAGGATGGACGAACTCTAGCGGATTACAA 499254 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| |||||||| || || | || | ||| | ||| | || ||||| || Sbjct 499253 TATCCAAAAAGAGTCTACGCTCCACCTTGTTCTCCGTCTGCGTGGTGGAAT 499203 Score = 120 bits (132), Expect = 5e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| |||| || ||||| || ||| | ||| | || | Sbjct 459920 AATGCAGATTTTCGTGAAGACTTTAACTGGGAAAACGATCACTTTGGAGGTGGAGGGTTC 459861 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | ||| || |||||||| |||||||| || ||||| ||||| Sbjct 459860 CGATACCATTGATAATGTTAAAGCTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 459801 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || | |||||| |||| || | | || || || Sbjct 459800 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACGCTTGCTGACTACAA 459741 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||||||| || || ||| | || |||| | ||| | ||||||||| Sbjct 459740 TATTCAAAAGGAGTCTACTCTCCACCTGGTGCTTCGTCTCCGAGGTGGT 459692 Score = 109 bits (120), Expect = 8e-19 Identities = 165/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || | || || ||||| ||||| ||| | |||||||| ||| Sbjct 466792 ATGCAAATCTTTGTTAAAATCCTCACCGGCAAGACTATTACTCTCGAGATTGAGAGCTCC 466733 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || |||| |||| |||||||||||||| || |||||||| Sbjct 466732 -GACACCATAGACAATGTGAAGGCGAAATTTCAGGATAAAGAAGGTATTCCTCCTGATCA 466674 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || || | || || || | |||||| | ||||| ||| ||||| || Sbjct 466673 GCAGAGGCTGATCTTCACCGGGAAGCAGCTGGAGGATGGACGAACTCTAGCGGATTACAA 466614 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| | ||||| || ||| | || | ||| ||||| | || ||||| || Sbjct 466613 TATCAAGAAAGAGTCTACTCT-CACCTTGTTCTACGTCTCCGTGGTGGAAT 466564 Score = 109 bits (120), Expect = 8e-19 Identities = 165/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || | || || ||||| ||||| ||| | |||||||| ||| Sbjct 504021 ATGCAAATCTTTGTTAAAATCCTCACCGGCAAGACTATTACTCTCGAGATTGAGAGCTCC 503962 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || |||| |||| |||||||||||||| || |||||||| Sbjct 503961 -GACACCATAGACAATGTGAAGGCGAAATTTCAGGATAAAGAAGGTATTCCTCCTGATCA 503903 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || || | || || || | |||||| | ||||| ||| ||||| || Sbjct 503902 GCAGAGGCTGATCTTCACCGGGAAGCAGCTGGAGGATGGACGAACTCTAGCGGATTACAA 503843 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| | ||||| || ||| | || | ||| ||||| | || ||||| || Sbjct 503842 TATCAAGAAAGAGTCTACTCT-CACCTTGTTCTACGTCTCCGTGGTGGAAT 503793 >seq25453 Length=344677 Score = 123 bits (136), Expect = 4e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAA 124596 |||||| || ||| | ||||| || || || || ||||| ||| | ||| ||||| || Sbjct 137225 AATGCAGATTTTTGTGAAGACTCTCACTGGGAAGACTATTACTCTGGAGGTTGAAAGCTC 137166 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || ||| || ||| | || || || || ||||||||||| || || ||||||| Sbjct 137165 A-GACACAGTTGACAATGTTAAGGCTAAGATCCAGGATAAAGAAGGGATCCCTCCTGATC 137107 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||| | || ||||| || || || | |||||| |||||||| | | |||||| | Sbjct 137106 AGCAAAGGTTGATATTTGCTGGGAAGCAGCTCGAGGATGGTCGAACACTTGCAGATTACA 137047 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| || |||||| | ||| | || | ||| | || ||||| || Sbjct 137046 ACATCCAAAAGGAGTCAACTCTCCATCTCGTCCTCCGTCTTCGTGGTGGAAT 136995 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || || || ||||| ||| | ||| | ||| Sbjct 136997 AATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACTATCACTCTTGAGGTGGAAAGCTC 136938 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| | || ||||||||||| || |||||||| || || || || Sbjct 136937 TGACACAATCGACAATGTGAAGGCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCA 136878 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || || || || ||||| || ||| | |||||| | | || | | |||||| || Sbjct 136877 GCAGAGACTGATCTTCGCAGGGAAGCAACTTGAGGATGGCAGGACCCTTGCAGATTACAA 136818 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 ||| || || ||||| ||| | || | || ||||||| Sbjct 136817 TATACAGAAGGAATCTACTCTACACCTTGTGCTACGTTT 136779 >seq25458 Length=394795 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || || ||||| ||||| ||| | ||| |||| ||| Sbjct 384939 ATGCAAATCTTTGTTAAGACCCTCACCGGCAAGACTATTACTCTCGAGGTTGAGAGCTCC 384998 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || ||||||||| |||||||||||||| || |||||||| Sbjct 384999 -GACACCATAGACAATGTGAAGGCGAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 385057 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || || || || || || | |||||| | ||||| ||| ||||| || Sbjct 385058 GCAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAGGATGGACGAACTCTAGCGGATTACAA 385117 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| | || | ||| | ||| | || ||||| || Sbjct 385118 CATCCAGAAAGAGTCTACTCTTCACCTTGTTCTCCGTCTGCGTGGTGGAAT 385168 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | |||||||| || || ||||| || || ||||| | ||| | Sbjct 387392 ATGCAGATATTTGTCAAGACACTGACTGGGAAAACCATTACATTAGAGGTCGAAAGTTCT 387451 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || || ||||| ||||||||||| || || || || || Sbjct 387452 GACACGATAGACAACGTCAAGGCCAAGATTCAGGATAAAGAAGGCATCCCTCCCGACCAG 387511 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || |||||||| ||||| | || ||| | ||||| | | |||| Sbjct 387512 CAGCGATTGATATTTGCAGGCAAACAGCTCGAAGATGGCAGAACACTCG-----CATAAC 387566 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||||||| ||||| |||| || || || | ||||| || Sbjct 387567 ATCCAGAAGGAATCAACTCTGCATCTGGTCTTGCGGTTGAGGGGTGGAAT 387616 >seq191313 Length=592 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || || ||||| || || || ||| | ||| | || Sbjct 567 AATGCAGATTTTTGTTAAAACTCTCACAGGAAAGACCATCACTCTCGAGGTCGAGAGTTC 508 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| || ||| |||| || |||||||| || ||||||||||| |||||||| | Sbjct 507 TGATACCATAGACAATGTTAAGGCA-AAAATTCAGGACAAAGAAGGTATCCCACCTGACC 449 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || | || ||||| || || || | || ||| | ||||| | | || || | Sbjct 448 AGCAGAGATTGATCTTTGCTGGGAAGCAGCTCGAAGATGGACGAACGCTTGCTGACTACA 389 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||| |||||||||||| ||||| | || | || || |||| || || Sbjct 388 ATATTCAGAAAGAATCAACTCTGCATCTTGTGCTTCGGTTGAGAGGGGGCAT 337 Score = 102 bits (112), Expect = 1e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||| | || || || ||||| || | ||| | || ||| | Sbjct 338 ATGCAGATATTTGTGAAGACCTTGACCGGGAAGACTATCACATTGGAGGTCGAGAGCTCA 279 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| || | || |||||||||||||| |||||||| || || ||||| Sbjct 278 -GATACAATAGACAACGTCAAGGCAAAAATTCAAGATAAGGAAGGTATTCCCCCAGATCA 220 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | |||||||| || || || | |||||| | | || ||| |||||||| Sbjct 219 GCAACGTTTAATTTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACTCTAGCTGATTATAA 160 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 |||||||| || || ||| | ||| |||| || Sbjct 159 CATTCAAAAGGAGTCGACTCTCCATCTGGTGTT 127 >seq21126 Length=987439 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685 || || || || ||||||||||| ||||| || || ||||| || ||||| || ||||| Sbjct 395786 ATCCAGGACAAGGAAGGTATACCTCCTGACCAGCAGAGGCTCATATTTGCGGGTAAACAG 395727 Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735 ||||| ||| | |||||||| ||| || ||||| || ||||||||||| Sbjct 395726 TTAGAAGATGGCCGAACATTGTTAGACTACAATATCCAGAAAGAATCAAC 395677 >seq26997 Length=104544 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || |||||||||||||| || || |||||||| || ||||| || ||||| || Sbjct 29836 CAGGACAAGGAAGGTATACCACCAGACCAGCAAAGGCTCATATTTGCCGGTAAACAGTTG 29777 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 || ||| | | || || | |||||| ||||| || |||||||| ||| Sbjct 29776 GAAGATGGCAGGACTTTGGCAGATTACAATATCCAGAAAGAATCGACT 29729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751662175513600