Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq25458 104 3e-17 seq18673 104 3e-17 seq191313 102 1e-16 seq25453 84.2 3e-11 >seq25458 Length=394795 Score = 104 bits (114), Expect = 3e-17 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| ||||| || || | ||| | ||| || || || || || ||||| | Sbjct 387390 CCGCCTCTGAGTCTCAACACTAGATGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGCT 387331 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | ||| || | || || |||||||||||||| | |||||||||||||||| Sbjct 387330 AGAGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGGA 387271 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| |||||||||||| || || Sbjct 387270 ATGCCTTCTTTGTCTTGGATTTTTGCCTTGACATTGTCTATAGTATCTGAACTCTCGACC 387211 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| ||| || || || |||| | ||||||| || || |||||| Sbjct 387210 TCTAATGTAATGGTCTTTCCTGCGAGAGTTTTAACAAAAATCTGCATT 387163 >seq18673 Length=525508 Score = 104 bits (114), Expect = 3e-17 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| ||||| || || | ||| | | | || || || || || ||||| | Sbjct 466339 CCGCCTCTGAGTCTCAACACTAGATGGAGAATCGACTCCTTCTGAATGTTGTAATCGGCT 466398 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | ||| || | || || |||||||||||||| | |||||||||||||||| Sbjct 466399 AGAGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGGA 466458 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| |||||||||||| || || Sbjct 466459 ATGCCTTCTTTGTCTTGGATTTTTGCCTTGACATTGTCTATAGTATCTGAACTCTCGACC 466518 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| ||| || || || ||||| | ||||||| || || |||||| Sbjct 466519 TCTAATGTAATGGTCTTTCCTGTGAGAGTTTTAACAAAAATCTGCATT 466566 Score = 104 bits (114), Expect = 3e-17 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| ||||| || || | ||| | | | || || || || || ||||| | Sbjct 503568 CCGCCTCTGAGTCTCAACACTAGATGGAGAATCGACTCCTTCTGAATGTTGTAATCGGCT 503627 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | ||| || | || || |||||||||||||| | |||||||||||||||| Sbjct 503628 AGAGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGGA 503687 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| |||||||||||| || || Sbjct 503688 ATGCCTTCTTTGTCTTGGATTTTTGCCTTGACATTGTCTATAGTATCTGAACTCTCGACC 503747 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| ||| || || || ||||| | ||||||| || || |||||| Sbjct 503748 TCTAATGTAATGGTCTTTCCTGTGAGAGTTTTAACAAAAATCTGCATT 503795 >seq191313 Length=592 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || ||||| ||||| || |||| ||| | ||| || || ||| || || |||||||| | Sbjct 112 CCGCCTCTGAGTCTCAACACCAGATGGAGAGTCGACTCCTTTTGA-ATGTTATAATCAGC 170 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| |||| ||| || | || || ||||||||||| || | ||||||||| || || Sbjct 171 TAGAGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTGGGGG 230 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| Sbjct 231 AATACCTTCCTTATCTTG 248 >seq25453 Length=344677 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAAT-CT 146154 || ||||| |||| ||| || |||| ||| || | ||||| |||||||| |||||| | Sbjct 136586 ATGTTATAGTCTGCAAGTGTCCTGCCATCCTCAAGCTGTTTACCAGCAAAGATCAATTCG 136645 Query 146155 TTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||||||||||||||| || || Sbjct 136646 CTGCTGATCAGGAGGAATTCCTTCTTTGTCCTG 136678 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | || | ||| | ||| || || || || || ||||||| Sbjct 136996 TTCCACCACGAAGACGGAGGACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAATCTG 137055 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| |||| | ||| || | || || |||||||| ||||| ||||||||||| |||| Sbjct 137056 CAAGTGTTCGACCATCCTCGAGCTGCTTCCCAGCAAATATCAACCTTTGCTGATCAGGAG 137115 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || ||||||||||| || Sbjct 137116 GGATCCCTTCTTTATCCTG 137134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739792484771840