Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq191313 89.7 4e-13 seq25458 87.8 1e-12 seq18673 87.8 1e-12 >seq191313 Length=592 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||||||||| || ||||| ||||| || || || || | || ||||| ||| Sbjct 339 CATGCAGATATTTGTGAAGACCTTGACCGGGAAGACTATCACATTGGAGGTCGA---GAG 283 Query 24891 C---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 | || | |||| | || |||| ||||||| | || ||||| | || || Sbjct 282 CTCAGATACAATAGACAACGTCAAGGCAAAAATTCAAGATAAGGAAGGTATTCCCCCAGA 223 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 |||||||||||||| | ||| ||||| || || || ||| || |||| | ||||| Sbjct 222 TCAGCAACGTTTAATTTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACTCTAGCTGATTA 163 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTT 25043 | ||| || || ||| | || || ||| | ||||| Sbjct 162 TAACATTCAAAAGGAGTCGACTCTCCATCTGGTGTT 127 >seq25458 Length=394795 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||| ||||||||||| | | || || || || || | || ||||| ||| Sbjct 387164 ATGCAGATTTTTGTTAAAACTCTCGCAGGAAAGACCATTACATTAGAGGTCGA---GAGT 387220 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 || | | |||| | ||| |||| |||||| | ||||||||| | || || Sbjct 387221 TCAGATACTATAGACAATGTCAAGGCAAAAATCCAAGACAAAGAAGGCATTCCTCCGGAT 387280 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 |||||||| || || | ||| ||||| || || || ||| | |||| | ||||||| Sbjct 387281 CAGCAACGCTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACTCTAGCCGATTAC 387340 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTT 25043 | ||| ||||| ||| | || || ||| ||||||| Sbjct 387341 AACATTCAGAAGGAGTCGACTCTCCATCTAGTGTT 387375 >seq18673 Length=525508 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||| ||||||||||| | || || || || || || | || ||||| ||| Sbjct 466565 ATGCAGATTTTTGTTAAAACTCTCACAGGAAAGACCATTACATTAGAGGTCGA---GAGT 466509 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 || | | |||| | ||| |||| |||||| | ||||||||| | || || Sbjct 466508 TCAGATACTATAGACAATGTCAAGGCAAAAATCCAAGACAAAGAAGGCATTCCTCCGGAT 466449 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 |||||||| || || | ||| ||||| || || || ||| | |||| | ||||||| Sbjct 466448 CAGCAACGCTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACTCTAGCCGATTAC 466389 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTT 25043 | ||| ||||| ||| | | || ||| ||||||| Sbjct 466388 AACATTCAGAAGGAGTCGATTCTCCATCTAGTGTT 466354 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||| ||||||||||| | || || || || || || | || ||||| ||| Sbjct 503794 ATGCAGATTTTTGTTAAAACTCTCACAGGAAAGACCATTACATTAGAGGTCGA---GAGT 503738 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 || | | |||| | ||| |||| |||||| | ||||||||| | || || Sbjct 503737 TCAGATACTATAGACAATGTCAAGGCAAAAATCCAAGACAAAGAAGGCATTCCTCCGGAT 503678 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 |||||||| || || | ||| ||||| || || || ||| | |||| | ||||||| Sbjct 503677 CAGCAACGCTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACTCTAGCCGATTAC 503618 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTT 25043 | ||| ||||| ||| | | || ||| ||||||| Sbjct 503617 AACATTCAGAAGGAGTCGATTCTCCATCTAGTGTT 503583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416255836163840