Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq35681 134 3e-27 seq91798 93.3 1e-14 >seq35681 Length=3718 Score = 134 bits (148), Expect = 3e-27 Identities = 561/871 (64%), Gaps = 36/871 (4%) Strand=Plus/Minus Query 2656 TCGGTCCAGCCGGCGTCGAATTCGAGGCGGCCGTTCTTGATCACTGACCAGGCCTTCATG 2715 |||||||| ||||| || |||||| ||| | || |||||| | |||||| | Sbjct 912 TCGGTCCAACCGGCATCCCATTCGATGCGCTTGCCCTGGATCACGTCCTGGGCCTTGAGC 853 Query 2716 ACCAACTGCGTCTTCACCTCGGGCGAGTAGCTGAAGGTGCGCACCCCCGGG-AAGAACTG 2774 |||| ||||| |||| | |||| |||| | | | ||| ||| ||||| | Sbjct 852 ACCAGGGCATTCTTCGCCTCCAGGCTGTAG-TGAATCGGAGTAGCCCGGGGGAAGAAGTC 794 Query 2775 GCGCACCAGCTGCGCGACGCCAGAGCCCATGCCGGTGGTGTCGACGCCGATGTAGGTGAC 2834 |||||| | || || | || | |||||| |||||| |||||||| ||| Sbjct 793 TTTCACCAGGTCGAACACCCCGTAACCGACGCCGGTAATGTCGATGCCGATGTGCTGGAC 734 Query 2835 CCAGTAGCGCTGGGTCACCTTGCGGATGAACTCGGCCTGTTCGGCGAAGTCCTTGCCGCG 2894 | |||||| | || ||| ||| || ||||| | | ||| | | || || Sbjct 733 GTTGAAGCGCTCGCACAGCTTCTCGATCTGCTTTGCCTGATGCGTGAACGACGTCCCCCG 674 Query 2895 GAATTGATGGCGCTCCAGCACGCGGAACTTGCCGCCCGGTACCGCCGGAGGCGCCACCAC 2954 | || |||||| | ||||||||||||||||| || || || || || || Sbjct 673 CCAGCTGTGCTTCTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGAC 614 Query 2955 CACCAGACCCGCGGTGTCGCCCGTCTCGGC-GGGGTCATAGCCCAGCCACACCTGGCGAT 3013 || |||| ||||| || ||| | ||||||||| || ||||| ||| |||| | Sbjct 613 AACGCACGTCGCGTCGTCGCGGGT-TCGACTGGGGTCATACCCGAGCCAGACCGGGCGGT 555 Query 3014 CACCGAACGGCCGCAGCGCGAACGGCTTGTAGTCCTCCGACCACAGGTCCCAGCTATCGA 3073 ||||||||||| | | ||| | |||||| | ||| ||| || || ||| Sbjct 554 TGTCGAACGGCCGCGGGCTGTCCGGGTCGTAGTCA---GTCCATAGGCCCAAG---TCGG 501 Query 3074 CCATGCACGGCTGCAGCATGGTCAACGGGAAAATGCTCGCGCCGTC--GTCGACGAACTG 3131 ||| ||| ||| |||||| | ||| ||| | || ||||| ||||| Sbjct 500 AATAGCAGCGCTCCAGGTCGGTCAAGGCGAA--TGCAGCCTGGGTGCTGTCGATGAACTT 443 Query 3132 GCACATCAGCAGGTTCTGGAAAGCCTCGGCGTCGTACTCGAGACGCAGCTCGTCGATGTC 3191 |||||| | ||| | | ||| ||| |||||||||| || |||| || | ||| Sbjct 442 GCACATGAACAGCTGTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTC 383 Query 3192 GAACAGATCGCAGCCACGGGCCTCGGCATCGAGGATGGTGACGATCTGGCGCCAGATGCG 3251 |||||| | |||||| | ||| ||| || | || |||| || || |||||| | Sbjct 382 GAACAGGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGCCC 323 Query 3252 GTCCTCGCACAGT-CGCC--CTTGCTGCAGGGCGTCA-TGACTTACGTC--GATCTTGAT 3305 |||| ||||| |||| | || | | || || || ||| | | ||| | Sbjct 322 GTCCGGGCACAACGCGCCGGCATGGATCTGCGCTTCGCTGGGCCACGGCCCGGCCTTCTT 263 Query 3306 GCGATCGGCGGCCGGCTTGCCCTTGTTGAAGCGCTCGCCAGTCCAGAATGTGTAGGCCTC 3365 || ||| ||||| ||| ||| |||||| |||||| | | || |||| Sbjct 262 ----TCCGCG-----CTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTG 212 Query 3366 ATGCGCCATCGAACTGGGCGTCGAGAAGTAGGTCCGGCGGTAGCGCTTCTGCATC----G 3421 |||| | || |||||||| |||||||||||| |||| | ||| ||||| | Sbjct 211 GTGCGTTACCGCGCTGGGCGTGGAGAAGTAGGTCAGGCGCCA---CTTTTGCATGCGAGG 155 Query 3422 CCATACCGCTGGCGACCTTGTTCAGCTCCTTGAACTTGAACGTCCAGAAGAACTCGTCGA 3481 |||| ||||||| ||| | | ||||| || ||| ||| ||||||| | ||||||| Sbjct 154 CCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGA 95 Query 3482 AGTAGAAGTTGCCGTGGTAGCCCTGGGCAGT 3512 ||||| || ||||||||||| ||| || || Sbjct 94 TGTAGACGTGGCCGTGGTAGCTCTGCGCCGT 64 >seq91798 Length=932 Score = 93.3 bits (102), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 30880 ATCGGTCGGTTCCTGCTCGGCCTGTACAACGGCCAAGCCCACCGCTTCGACCTCACCGAG 30939 || || || |||||||||||||| ||||||||| | | || ||| ||||| || ||| Sbjct 28 ATTGGGCGCTTCCTGCTCGGCCTCTACAACGGCGAGGAATTCCCCTTTGACCTGACTGAG 87 Query 30940 CTGCGCGGCCTCGACCCAGCGCTGTTCGATGCGTGCCTGTCCGTGCTGCGTATGGACTAC 30999 || |||||||| |||| | ||||| | | |||||| | || ||| ||||||||| Sbjct 88 CTTCGCGGCCTGGACCTGGATCTGTTTCAGGACTGCCTGGCGGTCCTGGTCATGGACTAC 147 Query 31000 -GCCCCGAAACAGGAAGTGCATGAGTACTTCGAAGACGGCGACGCGATCTGGCAGGACCT 31058 |||||| | ||| || || ||| || ||||| | || ||||||||| ||| Sbjct 148 AGCCCCG-AGTTGGAGGTCCACGAGCGGGTCCCCAACGGCAATGCCATCTGGCAGCGCCT 206 Query 31059 GAGCAAGCGCTGGGCCGCAG 31078 || | | | |||||| ||| Sbjct 207 GATCGAACTGTGGGCCCCAG 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113191795355808