Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq29890 201 1e-46 seq938 185 1e-41 seq21561 116 5e-21 >seq29890 Length=111316 Score = 201 bits (222), Expect = 1e-46 Identities = 416/617 (67%), Gaps = 4/617 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 |||||| ||||| ||||||||||| || |||||||| ||||| ||||| || || || Sbjct 72423 CAAACAGGCGAAGTCGCAGTGCAGCCCTTCGTCTCTGGAGATTAACTCGTTCGAGAAAGT 72482 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||||| |||||||| || |||||||| ||||| |||||||| ||| ||||||||| Sbjct 72483 CAGTCCCGGCATTAGCCCTCGCTTTTTGAGCCAGAATATGGAGCAGAAGCTTCCGGAAAA 72542 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCA 33755 ||| || ||||| || ||| ||||| | | || |||| || || | | | | Sbjct 72543 GAATATACCTTCGACACAAGCGAAGGCCACTA--TTCGCTCCGCAAACGACTCCGACCCC 72600 Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | ||||| | ||||| | ||||||| | | | || || || ||||| || || Sbjct 72601 TCGATCCAGCGGAGGGCCCACTTGGCCTTCGTCTCGATGCAGGGGATGGTTTCGATCGCG 72660 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 | ||||| ||| || || |||||| | ||||| |||| ||| || || ||| Sbjct 72661 TGGAAGAGCAGGTTCTTCTCCGCGGAATCTTTGATGTAAGTTTCGAGCAAGAGGCTGTAC 72720 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || || || || ||||| || ||||| |||||||| |||||||| | |||||| | Sbjct 72721 ATCTCGGAGTGGATGTTCTCTATGGCGATCTGAAAGCCGTAGAAGGCCCGAGCCTCCGAG 72780 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | ||| || || | ||||| | || | || || || || || || || Sbjct 72781 ACCTGGACCTCCTTCATGAATCGGCCCGCAAGGTTCTCCAATACGATGCCGTCGGATGCG 72840 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 34055 || || || || | || ||||| || |||| || ||||| | || || | ||| Sbjct 72841 GCGAAGAAGGCGAGCACGTGTTTGATGAAATGCTTCTCGTCAGCAGTAAGAGCGTCCCAG 72900 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 | || ||| | || | ||| || || || | ||||| || || || || || || Sbjct 72901 TGTCGGAGATCCTGGGACAAATCGACCTCCTCAGCCGTCCAGAAGGAGGCTTCGGCTTTC 72960 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || ||||| | |||||| | | | || || || ||||| ||| |||| || ||| ||| Sbjct 72961 TTGTACATCTCCCAGATTTGAGGGTACTGTATCGGGAACATACAGAATCGATCTGGGTTT 73020 Query 34176 GGTGCAAGGATAGGTTC 34192 || || |||| ||||| Sbjct 73021 GGGGCGAGGAGGGGTTC 73037 >seq938 Length=1173706 Score = 185 bits (204), Expect = 1e-41 Identities = 415/622 (67%), Gaps = 6/622 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| || |||||||| ||||||||||||||||||||||| |||| ||||| |||| Sbjct 1020734 ACAACAGGCATGCGAAGTCGCAGTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAA 1020793 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || | ||| ||||| ||||| || || || | ||||||||||| ||| |||| Sbjct 1020794 AAGTTAATCCTGGCATGAGGCCGCGTTTCTTCAACCAAAATATGGCGCAGAAGCTCCCGG 1020853 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCGC 33750 | ||||| || || || || ||||||||| | || | ||| || || ||| | Sbjct 1020854 AGAAGAATATCCCCTCAACGCAAGCAAAGGCGAGTAGCCGCTCGGCAAAAGATTCGGATC 1020913 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 ||| ||||| | | ||||| | ||||||||| | || || || | || || | Sbjct 1020914 CGTC---GATCCAACGTAGGGCCCACTTGGCCTTCTTCTCCACGCATGGGACTGTGTCAA 1020970 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | || ||||| | || || |||||| | || || |||| || ||||| Sbjct 1020971 TAGCTCGGAAGAGGCGACTCTTCTCGGCCGAATCTTTGATGTATGTTTCGAGCAGAAGAC 1021030 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 | ||||| || || || ||||| || || || ||||| |||||||| || | |||| Sbjct 1021031 TGTACATCTCGGAGTGGATGTTCTCGATTGCAATCTGGAATCCGTAAAACGCGCGCGCCT 1021090 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 ||| || ||| |||||| | || | | |||| ||| || || || ||||| Sbjct 1021091 CGGAAACCTGGACTTCTTTCATGAACCTGCCAGCTAGATTCTCCAAAACGATGCCATCGG 1021150 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 34050 ||| ||||| || |||| |||||||| || |||| || || || | || || | Sbjct 1021151 AGGCAGCAAAGAAGGCCAGAACATGTTTGATGAAATGCTTCTCATCGGCAGTGAGGGCTT 1021210 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | || || | || | ||| || || || |||||||||| || || || | Sbjct 1021211 CCCAGTGGGCGAGGTCCTGCGACAAATCTACCTCCTCGGCTGTCCAAAAGGAAGCTTCGG 1021270 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTG 34170 |||| || ||||| | ||| || | | | || | || ||||| ||| || | | || Sbjct 1021271 CCTTCTTGTACATTTCCCAAATCTGAGGGTACTCAATGGGGAACATACAGAAGCGGTCTG 1021330 Query 34171 GATTTGGTGCAAGGATAGGTTC 34192 | || | ||||||| ||||| Sbjct 1021331 GGTTCGCCGCAAGGAGCGGTTC 1021352 >seq21561 Length=15626 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | |||||| ||||| || ||||||||| | ||| | |||| Sbjct 4057 GTCCCGGCATTGAAAAGGGTAGGTGAAGCATGAGTAAACCATCGCTGAGACAACAGATGA 3998 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||| ||||| |||||||| | ||| ||||| || || || || | ||| || Sbjct 3997 TATGTTTTAATGGCTGAATCTATATCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 3939 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| || ||||||| || | || || || | ||| || |||| | Sbjct 3938 CATGTGCTGAGGCCTCTCAACAACCTTCCCTTGGATCTTTAAAAGGTAAGACCTTTCAAG 3879 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||||||||||||||| | || |||||||| || || || || Sbjct 3878 GGTTTTAAAACCAAAATAATCATAGTCAAAGTCTCTGTCATATATGAT 3831 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 ||||| || ||| |||| || || || || || || |||||| || |||| | | Sbjct 4957 TCTCTCTCATATCGAGTGTATAAGGTCTCAAATTCATCACCCCAACAATCAGCCAACCCA 4898 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 ||| | || | ||||| | ||||||||||| ||| | | | |||| || |||||| Sbjct 4897 GGAGACTCGTTTGGACAAAACAACGACCACTGTCCATTAGATTGGACTCTTTGCATAAAT 4838 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTC 63331 |||||||| | ||||||||| ||| |||||||| | | ||| ||||| Sbjct 4837 AGATCAGGCACCCAAAGAGCATAAAACAGATCTCTGGCACGATGCTCCTC 4788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626654718994560