Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq938 176 6e-39 seq21561 116 5e-21 >seq938 Length=1173706 Score = 176 bits (194), Expect = 6e-39 Identities = 394/588 (67%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| || |||||||| |||||||| |||||||||||||| |||| |||||||||| Sbjct 1020734 ACAACAGGCATGCGAAGTCGCAGTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAA 1020793 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 | || | ||| ||||| ||||| || || || | ||||||||||| |||| | | | || Sbjct 1020794 AAGTTAATCCTGGCATGAGGCCGCGTTTCTTCAACCAAAATATGG-CGCAGAAGCTCCCG 1020852 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCA 36325 || ||||| || || || || |||||||| | || | ||| || || ||| Sbjct 1020853 GAGAAGAATATCCCCTCAACGCAAGCAAAGGCGAGTAGCCGCTCGGCAAAAGATTCGGAT 1020912 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | ||| ||||| | | ||||| | ||||||||| | || || || | ||| || Sbjct 1020913 CCGTC---GATCCAACGTAGGGCCCACTTGGCCTTCTTCTCCACGCATGGGACTGTGTCA 1020969 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 ||||| ||||| | || || |||||| | ||||| || | || |||| Sbjct 1020970 ATAGCTCGGAAGAGGCGACTCTTCTCGGCCGAATCTTTGATGTATGTTTCGAGCAGAAGA 1021029 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 || ||||| || || || ||||| || || || || || |||||||| || | ||| Sbjct 1021030 CTGTACATCTCGGAGTGGATGTTCTCGATTGCAATCTGGAATCCGTAAAACGCGCGCGCC 1021089 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 |||| || ||| |||||| | || | | |||| ||| || || || || || Sbjct 1021090 TCGGAAACCTGGACTTCTTTCATGAACCTGCCAGCTAGATTCTCCAAAACGATGCCATCG 1021149 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA 36625 ||| ||||| || |||| |||||||| || |||| || || | | || || Sbjct 1021150 GAGGCAGCAAAGAAGGCCAGAACATGTTTGATGAAATGCTTCTCATCGGCAGTGAGGGCT 1021209 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 | ||| | || || | || | ||| || || || |||||||||| || || || Sbjct 1021210 TCCCAGTGGGCGAGGTCCTGCGACAAATCTACCTCCTCGGCTGTCCAAAAGGAAGCTTCG 1021269 Query 36686 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 ||||| || ||||| | ||| || | | | || | ||| || || ||| Sbjct 1021270 GCCTTCTTGTACATTTCCCAAATCTGAGGGTACTCAATGGGGAACATA 1021317 >seq21561 Length=15626 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | |||||| ||||| || ||||||||| | ||| | |||| Sbjct 4057 GTCCCGGCATTGAAAAGGGTAGGTGAAGCATGAGTAAACCATCGCTGAGACAACAGATGA 3998 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || | ||| ||||| |||||||| | ||| ||||| || || || || | ||| || Sbjct 3997 TATGTTTTAATGGCTGAATCTATATCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 3939 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| || ||||| | ||| | || || || | ||| || |||| | Sbjct 3938 CATGTGCTGAGGCCTCTCAACAACCTTCCCTTGGATCTTTAAAAGGTAAGACCTTTCAAG 3879 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||||||||||||||| | || |||||||| || || || || Sbjct 3878 GGTTTTAAAACCAAAATAATCATAGTCAAAGTCTCTGTCATATATGAT 3831 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || ||||| || | |||| ||| |||| ||| | |||| | ||| || | ||| ||| Sbjct 4457 CCACCCTGGTCCACATATCGAGCAGTGTCATTGAAGACTCGAAGCATCGGGACAATCCCA 4398 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || ||||||||||| ||||| ||||| |||||| | ||||| || ||| | || Sbjct 4397 TTTGATGTACCATTTGTCCCACGTATATAACTTCCAGTAGCACGGATGTTATGCACAGAA 4338 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||| || || ||| || | ||| || || | |||||||| ||| Sbjct 4337 ACACCAATTCCTCCAGCAGATTTGCTTATAATTGCACACTCCTTCAGAGTATCATATATG 4278 Query 66396 CCCTCTATACTATCATCCATCAT 66418 ||||| || |||||||| |||| Sbjct 4277 CCCTCAATGCTATCATCTTTCAT 4255 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 65955 TCTCTTTCGTAT--AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 66012 ||||| || ||| |||||||| || || || || || |||||| || |||| | Sbjct 4957 TCTCTCTCATATCGAGTGTATAAGGTC--TCAAATTCATCACCCCAACAATCAGCCAACC 4900 Query 66013 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 66072 ||||| | || | ||||| | ||||||||||| ||| | | | |||| || ||||| Sbjct 4899 CAGGAGACTCGTTTGGACAAAACAACGACCACTGTCCATTAGATTGGACTCTTTGCATAA 4840 Query 66073 AGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTC 66124 | |||||||| | ||||||||| ||| | |||||||| | ||| ||||| Sbjct 4839 ATAGATCAGGCACCCAAAGAGCATAAAACAGATCTCTGGCACGATGCTCCTC 4788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 654867522015680