Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq938 205 1e-47 seq29890 192 8e-44 seq21561 125 1e-23 >seq938 Length=1173706 Score = 205 bits (226), Expect = 1e-47 Identities = 419/620 (68%), Gaps = 2/620 (0%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || |||||||| ||||||||||||||||||||||| ||||| |||||||||| Sbjct 1020734 ACAACAGGCATGCGAAGTCGCAGTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAA 1020793 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || | ||| ||||| ||||| || || || | ||||||||||| |||| || ||| Sbjct 1020794 AAGTTAATCCTGGCATGAGGCCGCGTTTCTTCAACCAAAATATGG-CGCAGAAGCTCCCG 1020852 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || ||||| || || || || |||||||| | || | ||| || || || Sbjct 1020853 GAGAAGAATATCCCCTCAACGCAAGCAAAGGCGAGTAGCCGCTCGGCAAAAGATTCGGAT 1020912 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | | ||||| | | ||||| | ||||||||| | || || || | || || || Sbjct 1020913 CCGTCGATCCAACGTAGGGCCCACTTGGCCTTCTTCTCCACGCATGGGACTGTGTCAATA 1020972 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || ||||| | || || |||||| | || || |||| || |||||| Sbjct 1020973 GCTCGGAAGAGGCGACTCTTCTCGGCCGAATCTTTGATGTATGTTTCGAGCAGAAGACTG 1021032 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| || || || ||||| || || || ||||| |||||||| || | |||||| Sbjct 1021033 TACATCTCGGAGTGGATGTTCTCGATTGCAATCTGGAATCCGTAAAACGCGCGCGCCTCG 1021092 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | || ||| |||||| | || | |||||| ||| || || || || || | Sbjct 1021093 GAAACCTGGACTTCTTTCATGAACCTGCCAGCTAGATTCTCCAAAACGATGCCATCGGAG 1021152 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || ||||| || |||| |||||||| || ||||| || || | || || || | | Sbjct 1021153 GCAGCAAAGAAGGCCAGAACATGTTTGATGAAATGCTTCTCATCGGCAGTGAGGGCTTCC 1021212 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || | || || | || | |||||| || || |||||||||| || || || ||| Sbjct 1021213 CAGTGGGCGAGGTCCTGCGACAAATCTACCTCCTCGGCTGTCCAAAAGGAAGCTTCGGCC 1021272 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 || || ||||| | ||| || | | | || | || ||||| ||| || | | ||| Sbjct 1021273 TTCTTGTACATTTCCCAAATCTGAGGGTACTCAATGGGGAACATACAGAAGCGGTCTGGG 1021332 Query 50551 TTTGGTGCAAGGATCGGTTC 50570 || | ||||||| |||||| Sbjct 1021333 TTCGCCGCAAGGAGCGGTTC 1021352 >seq29890 Length=111316 Score = 192 bits (212), Expect = 8e-44 Identities = 417/618 (67%), Gaps = 6/618 (1%) Strand=Plus/Plus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 |||||| ||||| ||||||||||| || |||||||| |||| ||||| || || || Sbjct 72423 CAAACAGGCGAAGTCGCAGTGCAGCCCTTCGTCTCTGGAGATTAACTCGTTCGAGAAAGT 72482 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAA 50074 ||||| |||||||| || |||||||| ||||| |||||||| ||| || || |||| Sbjct 72483 CAGTCCCGGCATTAGCCCTCGCTTTTTGAGCCAGAATATGGA-GCAGAAGCTTCCGGAAA 72541 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TC 50132 |||| || ||||| || || ||||| || | || ||| || ||| | | | | | Sbjct 72542 AGAATATACCTTCGACACAAGCGAAGGCCACTATTCGCTCCGCA-AAC-GACTCCGACCC 72599 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 | ||||| | ||||| | ||||||| | | | || || || ||||| || || Sbjct 72600 CTCGATCCAGCGGAGGGCCCACTTGGCCTTCGTCTCGATGCAGGGGATGGTTTCGATCGC 72659 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | ||||| ||| || || |||||| | ||||| |||| ||| || || || Sbjct 72660 GTGGAAGAGCAGGTTCTTCTCCGCGGAATCTTTGATGTAAGTTTCGAGCAAGAGGCTGTA 72719 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| |||||||| |||||||| | |||||| | Sbjct 72720 CATCTCGGAGTGGATGTTCTCTATGGCGATCTGAAAGCCGTAGAAGGCCCGAGCCTCCGA 72779 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | ||| || || | ||||| | || | || || || || ||||| || Sbjct 72780 GACCTGGACCTCCTTCATGAATCGGCCCGCAAGGTTCTCCAATACGATGCCGTCGGATGC 72839 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCA 50432 || || || || | || ||||| || ||||| || |||| | || || | ||| Sbjct 72840 GGCGAAGAAGGCGAGCACGTGTTTGATGAAATGCTTCTCGTCAGCAGTAAGAGCGTCCCA 72899 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 | || ||| | || | ||| || || || | ||||| || || || || || || Sbjct 72900 GTGTCGGAGATCCTGGGACAAATCGACCTCCTCAGCCGTCCAGAAGGAGGCTTCGGCTTT 72959 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || ||||| | |||||| | | | || || || ||||| ||| |||| || ||| || Sbjct 72960 CTTGTACATCTCCCAGATTTGAGGGTACTGTATCGGGAACATACAGAATCGATCTGGGTT 73019 Query 50553 TGGTGCAAGGATCGGTTC 50570 ||| || |||| ||||| Sbjct 73020 TGGGGCGAGGAGGGGTTC 73037 >seq21561 Length=15626 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | |||||| ||||| || ||||||||| | ||||| |||| Sbjct 4057 GTCCCGGCATTGAAAAGGGTAGGTGAAGCATGAGTAAACCATCGCTGAGACAACAGATGA 3998 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | ||| ||||| |||||||| | ||| ||||| || || || || | ||| || Sbjct 3997 TATGTTTTAATGGCTGAATCTATATCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 3939 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| || ||||| | ||| | || || || | |||||| |||| | Sbjct 3938 CATGTGCTGAGGCCTCTCAACAACCTTCCCTTGGATCTTTAAAAGGTAAGACCTTTCAAG 3879 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||||||||||||||| | || |||||||| || || || || Sbjct 3878 GGTTTTAAAACCAAAATAATCATAGTCAAAGTCTCTGTCATATATGAT 3831 Score = 109 bits (120), Expect = 8e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 ||||| || ||| | || ||||| || || || || |||||| ||| | || ||| Sbjct 4957 TCTCTCTCATATCGAGTGTATAAGGTCTCAAATTCATCACCCCAACAATCAGCCAACCCA 4898 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953 ||| | |||| ||||| | ||||||||||| ||||| | | |||| || |||||| Sbjct 4897 GGAGACTCGTTTGGACAAAACAACGACCACTGTCCATTAGATTGGACTCTTTGCATAAAT 4838 Query 79954 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003 |||||||| | ||||||||| ||| |||||||||| | ||||||||| Sbjct 4837 AGATCAGGCACCCAAAGAGCATAAAACAGATCTCTGGCACGATGCTCCTC 4788 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || ||||| || | |||| ||| |||| ||| | |||| | ||| || | ||| ||| Sbjct 4457 CCACCCTGGTCCACATATCGAGCAGTGTCATTGAAGACTCGAAGCATCGGGACAATCCCA 4398 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||||||||||| ||||| ||||| |||||| | ||||| || ||| | || Sbjct 4397 TTTGATGTACCATTTGTCCCACGTATATAACTTCCAGTAGCACGGATGTTATGCACAGAA 4338 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| || || ||| || | ||| || || | |||||||| ||| Sbjct 4337 ACACCAATTCCTCCAGCAGATTTGCTTATAATTGCACACTCCTTCAGAGTATCATATATG 4278 Query 80275 CCCTCTATGCTATCATCAATCAT 80297 ||||| ||||||||||| |||| Sbjct 4277 CCCTCAATGCTATCATCTTTCAT 4255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714661725913280