Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq938 104 2e-17 seq7589 89.7 5e-13 >seq938 Length=1173706 Score = 104 bits (114), Expect = 2e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || || || || || || || ||||| ||||| || || ||||| ||||| |||||| Sbjct 1020742 CATGCGAAGTCGCAGTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAAAAGTTAAT 1020801 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 |||||||| | || ||||| || ||||||||||| || ||| ||||| |||||| Sbjct 1020802 CCTGGCATGAGGCCGCGTTTCTTCAACCAAAATATGGCGCAGAAGCTCCCGGAGAAGAAT 1020861 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGAT 13824 || |||||||| |||||| || | ||| || || |||| ||| Sbjct 1020862 ATCCCCTCAACGCAAGCAAAGGCGAGTAGCCGCTCGGCAAAAGAT 1020906 >seq7589 Length=310294 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| || || || || |||||||||||| |||||| |||||||| ||||| || Sbjct 171407 CAAGCAAAGTCGCAGTGGAGACCCTCATCTCTAGAAATAAGCTCGTTTGAGAATGTCAAA 171348 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||||||||| | || || | |||||| || ||| Sbjct 171347 CCTGGCATCAATCCCCTCTTCTTAAGCCAAAAAATCGCA 171309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476185374905280