Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq25458 89.7 4e-13 seq18673 89.7 4e-13 seq25453 82.4 6e-11 >seq25458 Length=394795 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| ||||| | ||||| ||| |||||| || | |||||||||| | || | Sbjct 387381 AGTCTCAACACTAGATGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGCTAGAGTCCTC 387322 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || || | || ||||| ||||||||||| || || ||||| | || | |||||| Sbjct 387321 CCATCCTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGGAATGCCTTCT 387262 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || ||| | ||||| || | | || || | |||||| |||| || Sbjct 387261 TTGTCTTGGATTTTTGCCTTGACATTGTCTATAGTATCTGAACTCTCGACCTCTAATGTA 387202 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || ||||| | |||||||| |||||||| |||||| Sbjct 387201 ATGGTCTTTCCTGCGAGAGTTTTAACAAAAATCTGCATT 387163 >seq18673 Length=525508 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| ||||| | ||||| | | |||||| || | |||||||||| | || | Sbjct 466348 AGTCTCAACACTAGATGGAGAATCGACTCCTTCTGAATGTTGTAATCGGCTAGAGTCCTC 466407 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || || | || ||||| ||||||||||| || || ||||| | || | |||||| Sbjct 466408 CCATCCTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGGAATGCCTTCT 466467 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || ||| | ||||| || | | || || | |||||| |||| || Sbjct 466468 TTGTCTTGGATTTTTGCCTTGACATTGTCTATAGTATCTGAACTCTCGACCTCTAATGTA 466527 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || ||||| || |||||||| |||||||| |||||| Sbjct 466528 ATGGTCTTTCCTGTGAGAGTTTTAACAAAAATCTGCATT 466566 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| ||||| | ||||| | | |||||| || | |||||||||| | || | Sbjct 503577 AGTCTCAACACTAGATGGAGAATCGACTCCTTCTGAATGTTGTAATCGGCTAGAGTCCTC 503636 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || || | || ||||| ||||||||||| || || ||||| | || | |||||| Sbjct 503637 CCATCCTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGGAATGCCTTCT 503696 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || ||| | ||||| || | | || || | |||||| |||| || Sbjct 503697 TTGTCTTGGATTTTTGCCTTGACATTGTCTATAGTATCTGAACTCTCGACCTCTAATGTA 503756 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || ||||| || |||||||| |||||||| |||||| Sbjct 503757 ATGGTCTTTCCTGTGAGAGTTTTAACAAAAATCTGCATT 503795 >seq25453 Length=344677 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | || | ||||| ||| ||||||||| | |||||||| | Sbjct 136998 CCACCACGAAGACGGAGGACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAATCTGCA 137057 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || || | || || || ||||| ||||| | || ||||| | || Sbjct 137058 AGTGTTCGACCATCCTCGAGCTGCTTCCCAGCAAATATCAACCTTTGCTGATCAGGAGGG 137117 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGAC 43061 | |||||||| || |||| | || || || |||||||||| ||| | | || Sbjct 137118 ATCCCTTCTTTATCCTGGATCTTAGCCTTAACATTGTCAACTGTGTCTG-AGCTTTCAAC 137176 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| || || || ||||| ||||||||||| |||||| Sbjct 137177 CTCCAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAAAATCTGCATT 137225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379502280005616