Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq938 197 2e-45 seq29890 187 3e-42 seq21561 111 2e-19 >seq938 Length=1173706 Score = 197 bits (218), Expect = 2e-45 Identities = 420/623 (67%), Gaps = 8/623 (1%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || |||||||| ||||||||||||||||| ||||| |||| |||||||||| Sbjct 1020734 ACAACAGGCATGCGAAGTCGCAGTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAA 1020793 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 | || | ||| ||||| ||||| || || || | ||||||||| | |||| | | | || Sbjct 1020794 AAGTTAATCCTGGCATGAGGCCGCGTTTCTTCAACCAAAATAT-GGCGCAGAAGCTCCCG 1020852 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCA 42232 || ||||| || || || || |||||||| | || | ||| || || ||| Sbjct 1020853 GAGAAGAATATCCCCTCAACGCAAGCAAAGGCGAGTAGCCGCTCGGCAAAAGATTCGGAT 1020912 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | ||| ||||| | | ||||| | ||||||||| | || || || | || || Sbjct 1020913 CCGTC---GATCCAACGTAGGGCCCACTTGGCCTTCTTCTCCACGCATGGGACTGTGTCA 1020969 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 || || ||||| | || || |||||| | ||||| |||| || |||| Sbjct 1020970 ATAGCTCGGAAGAGGCGACTCTTCTCGGCCGAATCTTTGATGTATGTTTCGAGCAGAAGA 1021029 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || ||||| || || || ||||| || || || ||||| |||||||| || | ||| Sbjct 1021030 CTGTACATCTCGGAGTGGATGTTCTCGATTGCAATCTGGAATCCGTAAAACGCGCGCGCC 1021089 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 |||| |||||| |||||| | || | |||||| ||| || || || || || Sbjct 1021090 TCGGAAACCTGGACTTCTTTCATGAACCTGCCAGCTAGATTCTCCAAAACGATGCCATCG 1021149 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA 42532 ||| ||||| || |||| |||||||| || |||| || || || | || | Sbjct 1021150 GAGGCAGCAAAGAAGGCCAGAACATGTTTGATGAAATGCTTCTCATCGGCAGTGAGGGCT 1021209 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 | ||| | || || | || | |||||| || || | |||||||| || ||||| Sbjct 1021210 TCCCAGTGGGCGAGGTCCTGCGACAAATCTACCTCCTCGGCTGTCCAAAAGGAAGCTTCG 1021269 Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTT 42652 ||||| || ||||| | ||| || | | | || | ||| ||||| ||| || | | | Sbjct 1021270 GCCTTCTTGTACATTTCCCAAATCTGAGGGTACTCAATGGGGAACATACAGAAGCGGTCT 1021329 Query 42653 GGATTTGGTGCAAGGATCGGTTC 42675 || || | ||||||| |||||| Sbjct 1021330 GGGTTCGCCGCAAGGAGCGGTTC 1021352 >seq29890 Length=111316 Score = 187 bits (206), Expect = 3e-42 Identities = 415/618 (67%), Gaps = 6/618 (1%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 |||||| ||||| ||||||||||| || || ||||| ||||| ||||| || || || Sbjct 72423 CAAACAGGCGAAGTCGCAGTGCAGCCCTTCGTCTCTGGAGATTAACTCGTTCGAGAAAGT 72482 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAA 42179 ||||| |||||||| || |||||||| ||||| ||||| || ||| || ||| |||| Sbjct 72483 CAGTCCCGGCATTAGCCCTCGCTTTTTGAGCCAGAATATGGA-GCAGAAGCTTCCGGAAA 72541 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG--TC 42237 |||| || ||||| || || ||||| | | || |||| || || | | | | Sbjct 72542 AGAATATACCTTCGACACAAGCGAAGGCCACTA--TTCGCTCCGCAAACGACTCCGACCC 72599 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | ||||| | ||||| | ||||||| | | | || || || ||||| || || Sbjct 72600 CTCGATCCAGCGGAGGGCCCACTTGGCCTTCGTCTCGATGCAGGGGATGGTTTCGATCGC 72659 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 | ||||| ||| || || |||||| | || || |||| ||| || || || Sbjct 72660 GTGGAAGAGCAGGTTCTTCTCCGCGGAATCTTTGATGTAAGTTTCGAGCAAGAGGCTGTA 72719 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| |||||||| |||||||| | ||||| | Sbjct 72720 CATCTCGGAGTGGATGTTCTCTATGGCGATCTGAAAGCCGTAGAAGGCCCGAGCCTCCGA 72779 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| || || | ||||| | || | || || || || ||||| || Sbjct 72780 GACCTGGACCTCCTTCATGAATCGGCCCGCAAGGTTCTCCAATACGATGCCGTCGGATGC 72839 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCA 42537 || || || || | || ||||| || |||| || ||||| | || | | ||| Sbjct 72840 GGCGAAGAAGGCGAGCACGTGTTTGATGAAATGCTTCTCGTCAGCAGTAAGAGCGTCCCA 72899 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 | || ||| | || | ||| || || || ||||||| || || ||||| || || Sbjct 72900 GTGTCGGAGATCCTGGGACAAATCGACCTCCTCAGCCGTCCAGAAGGAGGCTTCGGCTTT 72959 Query 42598 TTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 || ||||| | |||||| | | | || || || ||||| ||| |||| || ||| || Sbjct 72960 CTTGTACATCTCCCAGATTTGAGGGTACTGTATCGGGAACATACAGAATCGATCTGGGTT 73019 Query 42658 TGGTGCAAGGATCGGTTC 42675 ||| || |||| ||||| Sbjct 73020 TGGGGCGAGGAGGGGTTC 73037 >seq21561 Length=15626 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | |||||| ||||| || ||||||||| | ||||| |||| Sbjct 4057 GTCCCGGCATTGAAAAGGGTAGGTGAAGCATGAGTAAACCATCGCTGAGACAACAGATGA 3998 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || | ||| ||||| |||||||| | ||| || || || || || || | ||| || Sbjct 3997 TATGTTTTAATGGCTGAATCTATATCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 3939 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| |||||||| || ||||| | ||| | || || || | ||| || |||| | Sbjct 3938 CATGTGCTGAGGCCTCTCAACAACCTTCCCTTGGATCTTTAAAAGGTAAGACCTTTCAAG 3879 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||||||||||||||| | || |||||||| || || || || Sbjct 3878 GGTTTTAAAACCAAAATAATCATAGTCAAAGTCTCTGTCATATATGAT 3831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667768806051520