Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq25458 87.8 2e-12 seq18673 87.8 2e-12 seq25453 84.2 2e-11 >seq25458 Length=394795 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 || ||||| || | ||| | || ||||| || || ||||| ||||| | ||| || Sbjct 385644 AACCGCAAGACCAGATGCAGAGTTGATTCCTTCTGGATGTTATAATCCGCGAGTGTTCTG 385585 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 |||||||| ||||| || ||| | |||| || ||||| |||||||| ||||||||| Sbjct 385584 CCATCTTCGAGCTGTTTGCCTGCAAATATCAATCGCTGCTGGTCGGGAGGAATGCCTTCT 385525 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| ||| || || | | || | |||||| | ||| || || | || Sbjct 385524 TTGTCCTGAATCTTGGCCTTGACGTTGTCTATCGTGTCAGAACTTTCGACCTCTAATGTA 385465 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || |||| ||| || || ||||| ||||| Sbjct 385464 ATGGTTTTCCCAGTCAGTGTCTTGACAAATATCTGCAT 385427 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| |||| ||| | || || || || || |||||||||||| | || ||| || Sbjct 387376 CAACACTAGATGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGCTAGAGTCCTCCCATC 387317 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||| || || |||||| | |||| ||||||||||| ||||| |||||||||||||| Sbjct 387316 CTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGGAATGCCTTCTTTGTC 387257 >seq18673 Length=525508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 || ||||| || | ||| | || ||||| || || ||||| ||||| | ||| || Sbjct 459930 AACCGCAAGACCAGATGCAGAGTCGATTCCTTCTGGATGTTATAATCCGCGAGTGTTCTG 459989 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 |||||||| ||||| || ||| | |||| || ||||| |||||||| ||||||||| Sbjct 459990 CCATCTTCGAGCTGTTTGCCTGCAAATATCAATCGCTGCTGGTCGGGAGGAATGCCTTCT 460049 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| ||| || || | | || | |||||| | ||| || || | || Sbjct 460050 TTGTCCTGAATCTTGGCCTTGACGTTGTCTATCGTGTCAGAACTTTCAACCTCTAATGTA 460109 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || |||| ||| || || ||||| ||||| Sbjct 460110 ATGGTTTTCCCAGTCAGTGTCTTGACAAATATCTGCAT 460147 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 || ||||| || | ||| | || ||||| || || ||||| ||||| | ||| || Sbjct 460386 AACCGCAAGACCAGATGCAGAGTCGATTCCTTCTGGATGTTATAATCCGCGAGTGTTCTG 460445 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 |||||||| ||||| || ||| | |||| || ||||| |||||||| ||||||||| Sbjct 460446 CCATCTTCGAGCTGTTTGCCTGCAAATATCAATCGCTGCTGGTCGGGAGGAATGCCTTCT 460505 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| ||| || || | | || | |||||| | ||| || || | || Sbjct 460506 TTGTCCTGAATCTTGGCCTTGACGTTGTCTATCGTGTCAGAACTTTCAACCTCTAATGTA 460565 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || |||| ||| || || ||||| ||||| Sbjct 460566 ATGGTTTTCCCAGTCAGTGTCTTGACAAATATCTGCAT 460603 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 || ||||| || | ||| | || ||||| || || ||||| ||||| | ||| || Sbjct 497852 AACCGCAAGACCAGATGCAGAGTCGATTCCTTCTGGATGTTATAATCCGCGAGTGTTCTG 497911 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 |||||||| ||||| || ||| | |||| || ||||| |||||||| ||||||||| Sbjct 497912 CCATCTTCGAGCTGTTTGCCTGCAAATATCAATCGCTGCTGGTCGGGAGGAATGCCTTCT 497971 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| ||| || || | | || | |||||| | ||| || || | || Sbjct 497972 TTGTCCTGAATCTTGGCCTTGACGTTGTCTATCGTGTCAGAACTTTCAACCTCTAATGTA 498031 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || |||| ||| || || ||||| ||||| Sbjct 498032 ATGGTTTTCCCAGTCAGTGTCTTGACAAATATCTGCAT 498069 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 || ||||| || | ||| | || ||||| || || ||||| ||||| | ||| || Sbjct 498308 AACCGCAAGACCAGATGCAGAGTCGATTCCTTCTGGATGTTATAATCCGCGAGTGTTCTG 498367 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 |||||||| ||||| || ||| | |||| || ||||| |||||||| ||||||||| Sbjct 498368 CCATCTTCGAGCTGTTTGCCTGCAAATATCAATCGCTGCTGGTCGGGAGGAATGCCTTCT 498427 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| ||| || || | | || | |||||| | ||| || || | || Sbjct 498428 TTGTCCTGAATCTTGGCCTTGACGTTGTCTATCGTGTCAGAACTTTCAACCTCTAATGTA 498487 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || |||| ||| || || ||||| ||||| Sbjct 498488 ATGGTTTTCCCAGTCAGTGTCTTGACAAATATCTGCAT 498525 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 || ||||| || | ||| | || ||||| || || ||||| ||||| | ||| || Sbjct 498764 AACCGCAAGACCAGATGCAGAGTCGATTCCTTCTGGATGTTATAATCCGCGAGTGTTCTG 498823 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 |||||||| ||||| || ||| | |||| || ||||| |||||||| ||||||||| Sbjct 498824 CCATCTTCGAGCTGTTTGCCTGCAAATATCAATCGCTGCTGGTCGGGAGGAATGCCTTCT 498883 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| ||| || || | | || | |||||| | ||| || || | || Sbjct 498884 TTGTCCTGAATCTTGGCCTTGACGTTGTCTATCGTGTCAGAACTTTCAACCTCTAATGTA 498943 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || |||| ||| || || ||||| ||||| Sbjct 498944 ATGGTTTTCCCAGTCAGTGTCTTGACAAATATCTGCAT 498981 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| |||| ||| | | || || || || |||||||||||| | || ||| || Sbjct 466353 CAACACTAGATGGAGAATCGACTCCTTCTGAATGTTGTAATCGGCTAGAGTCCTCCCATC 466412 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||| || || |||||| | |||| ||||||||||| ||||| |||||||||||||| Sbjct 466413 CTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGGAATGCCTTCTTTGTC 466472 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| |||| ||| | | || || || || |||||||||||| | || ||| || Sbjct 503582 CAACACTAGATGGAGAATCGACTCCTTCTGAATGTTGTAATCGGCTAGAGTCCTCCCATC 503641 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||| || || |||||| | |||| ||||||||||| ||||| |||||||||||||| Sbjct 503642 CTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGGAATGCCTTCTTTGTC 503701 >seq25453 Length=344677 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||||||| | ||| | || || || ||||| ||||| || || | ||| || Sbjct 136553 CGCAAAACAAGATGCAGCGTGGACTCCTTTTGGATGTTATAGTCTGCAAGTGTCCTGCCA 136612 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGA-CGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || || |||||||||||| |||||| || |||||||| ||||| || |||||||| Sbjct 136613 TCCTCAAGCTGTTTACCAGCAAAGATCAATTCGCTGCTGATCAGGAGGAATTCCTTCTTT 136672 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| |||||| ||| | | || | |||||| | || || || | || | Sbjct 136673 GTCCTGAATTTTGGCTTTAACATTGTCAATCGTGTCAGAACTCTCGACCTCCAAGGTGAT 136732 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || ||||| || || || || || ||||| Sbjct 136733 GGTCTTCCCAGTCAAGGTCTTAACAAAGATCTGCAT 136768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504468224384640