Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq11878 98.7 8e-16 seq18673 96.9 3e-15 seq104699 89.7 4e-13 seq339907 84.2 2e-11 seq25458 84.2 2e-11 >seq11878 Length=786559 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| ||||| ||||||||||| | ||| | |||||| |||||| || || Sbjct 516456 GTGGACTCCTTCTGAATGTTGTAATCCGCTAGGGTTCTTCCGTCCTGCAGCTGCTTCCCG 516397 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 | |||| | | |||| |||||| || | || || ||||| ||| ||| | | Sbjct 516396 GAGAAAATCAACCGCTGCAGATCCAGCGGGATCCCTTCCTTGTCCCAAATCTTCGATCTC 516337 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | |||| |||||| | ||| ||||| ||||| ||||| || | || ||| Sbjct 516336 ACATTGTCGACCGTATCGGAACTCTCAACTTCGAGAGTAATCGTTTTGCCAGGTAGGGTT 516277 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||| ||||| Sbjct 516276 TTCACAAAAATCTGCAT 516260 >seq18673 Length=525508 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||||||||||||||| || || | || | ||||| Sbjct 459710 CACCAGGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCAGCAAGCGTGCGACCATCCTC 459769 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || ||||||||||| || | ||| |||||||| Sbjct 459770 GAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTG 459829 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | |||||| | |||| || | || || ||||| Sbjct 459830 AATCTTAGCTTTAACATTATCAATGGTATCGGAACCCTCCACCTCCAAAGTGATCGTTTT 459889 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||||||| || || ||||| |||||| Sbjct 459890 CCCAGTTAAAGTCTTCACGAAAATCTGCATT 459920 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886 || ||||||| || | || |||||||||||||| || ||||| || | || || | Sbjct 460161 CTCAACACCAGATGGAGAGTCGACTCCTTTTGAATGTTATAATCAGCTAGAGTCCTGCCA 460220 Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 ||||| ||||| || || ||| | || || ||||||||||| || | ||| |||||| Sbjct 460221 TCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTG 460280 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006 || ||| || ||| || | | | |||||| | |||| || | || || Sbjct 460281 TCTTGAATCTTAGCTTTAACATTATCAATGGTATCGGAACCCTCCACCTCCAAAGTGATC 460340 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| || |||||||| || || ||||| |||||| Sbjct 460341 GTTTTCCCAGTTAAAGTCTTCACGAAAATCTGCATT 460376 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886 || ||||||| || | || |||||||| ||||| |||||||| || | || | | Sbjct 497627 CTCAACACCAGATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCTAGAGTCCTCCCA 497686 Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 ||||| ||||| || || ||| | || || ||||||||||| || | ||| |||||| Sbjct 497687 TCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTG 497746 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006 || ||| || ||| || | | | |||||| | |||| || | || || Sbjct 497747 TCTTGAATCTTAGCTTTAACATTATCAATGGTATCGGAACCCTCCACCTCCAAAGTGATC 497806 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| || |||||||| || || ||||| |||||| Sbjct 497807 GTTTTCCCAGTTAAAGTCTTCACGAAAATCTGCATT 497842 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886 || ||||||| || | || |||||||| ||||| |||||||| || | || | | Sbjct 498083 CTCAACACCAGATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCTAGAGTCCTCCCA 498142 Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 ||||| ||||| || || ||| | || || ||||||||||| || | ||| |||||| Sbjct 498143 TCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTG 498202 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006 || ||| || ||| || | | | |||||| | |||| || | || || Sbjct 498203 TCTTGAATCTTAGCTTTAACATTATCAATGGTATCGGAACCCTCCACCTCCAAAGTGATC 498262 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| || |||||||| || || ||||| |||||| Sbjct 498263 GTTTTCCCAGTTAAAGTCTTCACGAAAATCTGCATT 498298 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886 || ||||||| || | || |||||||| ||||| |||||||| || | || | | Sbjct 498539 CTCAACACCAGATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCTAGAGTCCTCCCA 498598 Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 ||||| ||||| || || ||| | || || ||||||||||| || | ||| |||||| Sbjct 498599 TCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTG 498658 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006 || ||| || ||| || | | | |||||| | |||| || | || || Sbjct 498659 TCTTGAATCTTAGCTTTAACATTATCAATGGTATCGGAACCCTCCACCTCCAAAGTGATC 498718 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| || |||||||| || || ||||| |||||| Sbjct 498719 GTTTTCCCAGTTAAAGTCTTCACGAAAATCTGCATT 498754 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||||||||| ||||| || || | || | ||||| Sbjct 465900 CACCAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGCGTCCGACCATCCTC 465959 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || ||||||||||| || | ||| |||||||| Sbjct 465960 GAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTG 466019 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | |||||| | |||| || | || || ||||| Sbjct 466020 AATCTTAGCTTTAACATTATCAATGGTATCGGAACTCTCCACCTCCAACGTGATCGTTTT 466079 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||||||| || || ||||| |||||| Sbjct 466080 CCCAGTTAAAGTCTTCACGAAAATCTGCATT 466110 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||||||||| ||||| || || | || | ||||| Sbjct 503129 CACCAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGCGTCCGACCATCCTC 503188 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || ||||||||||| || | ||| |||||||| Sbjct 503189 GAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTG 503248 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | |||||| | |||| || | || || ||||| Sbjct 503249 AATCTTAGCTTTAACATTATCAATGGTATCGGAACTCTCCACCTCCAACGTGATCGTTTT 503308 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||||||| || || ||||| |||||| Sbjct 503309 CCCAGTTAAAGTCTTCACGAAAATCTGCATT 503339 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||| | ||||||||| ||||| |||||||||||||| | ||| | ||||||||||| Sbjct 462000 GTGGAGCGTAGACTCTTTTTGGATATTGTAATCCGCTAGAGTTCGTCCATCCTCCAGCTG 462059 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || || | || || ||||||||||| || | || ||||| || |||||| Sbjct 462060 CTTCCCGGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCTTTATCCTGAATTTT 462119 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 | || || | | | | || ||| ||| |||| ||||| || || || || Sbjct 462120 CGCCTTCACATTGTCTATGGTGTCGGAGCTCTCAACCTCGAGAGTAATAGTCTTGCCGGT 462179 Query 19018 TAAAGTTTTGACAAAAATTTGCATTTTAAAT 19048 | || || ||||| |||||||| | |||| Sbjct 462180 GAGGGTCTTAACAAATATTTGCATCTGAAAT 462210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||||||||| ||||| || || | || | ||||| Sbjct 497181 CACCAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGCGTGCGACCATCCTC 497240 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || ||||||||||| || | ||| |||||||| Sbjct 497241 GAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTG 497300 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | ||||| | |||| || | || || ||||| Sbjct 497301 AATCTTAGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAACGTGATCGTTTT 497360 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||||||| || || ||||| |||||| Sbjct 497361 CCCAGTTAAAGTCTTCACGAAAATCTGCATT 497391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||| | ||||||||| ||||| |||||||||||||| | ||| | ||||||||||| Sbjct 499229 GTGGAGCGTAGACTCTTTTTGGATATTGTAATCCGCTAGAGTTCGTCCATCCTCCAGCTG 499288 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || || | || || ||||||||||| || | || ||||| || |||||| Sbjct 499289 CTTCCCGGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCTTTATCCTGAATTTT 499348 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 | || || | | | | || ||| ||| |||| ||||| || || || || Sbjct 499349 CGCCTTCACATTGTCTATGGTGTCGGAGCTCTCAACCTCGAGAGTAATAGTCTTGCCGGT 499408 Query 19018 TAAAGTTTTGACAAAAATTTGCATTTTAAAT 19048 | || || ||||| |||||||| | |||| Sbjct 499409 GAGGGTCTTAACAAATATTTGCATCTGAAAT 499439 >seq104699 Length=868 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| ||| | ||||| ||||| || || || || || || ||||| || ||| Sbjct 842 CCACCACGCAGCCTCAGCACCAAGTGCAGAGTCGATTCTTTCTGGATGTTGTAGTCGGCC 783 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | ||||||||||||| ||||| ||| | || || |||||||| || || Sbjct 782 AAGGTTCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 723 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||| || |||||| | | | || ||| ||| Sbjct 722 ATCCCTTCCTTGTCCTGAATCTTGGCTTTTACGTTATCAATGGTGTCGGAGCTCTCGACC 663 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||||||||| || || | ||| || ||||| || ||||| Sbjct 662 TCAAGGGTAATGGTTTTCCCCGTAAGAGTCTTTACAAAGATCTGCAT 616 >seq339907 Length=279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||||||||| ||||| || || | || | ||||| Sbjct 36 CACCAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGCGTACGACCATCCTC 95 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || ||||||||||| || | ||| |||||||| Sbjct 96 GAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTG 155 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | ||||| | |||| || | || || ||||| Sbjct 156 AATCTTAGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAACGTGATCGTTTT 215 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||||||| || || ||||| |||||| Sbjct 216 CCCAGTTAAAGTCTTCACGAAAATCTGCATT 246 >seq25458 Length=394795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||||||||| ||||| || || | || | ||||| Sbjct 385864 CACCAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGCGTACGACCATCCTC 385805 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || ||||||||||| || | ||| |||||||| Sbjct 385804 GAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTG 385745 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | ||||| | |||| || | || || ||||| Sbjct 385744 AATCTTAGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAACGTGATCGTTTT 385685 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||||||| || || ||||| |||||| Sbjct 385684 CCCAGTTAAAGTCTTCACGAAAATCTGCATT 385654 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||||||||| ||||| || || | || | ||||| Sbjct 387824 CACCAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGCGTGCGACCATCCTC 387765 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || ||||||||||| || | ||| |||||||| Sbjct 387764 GAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTG 387705 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | ||||| | |||| || | || || ||||| Sbjct 387704 AATCTTAGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAACGTGATCGTTTT 387645 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||||||| || || ||||| |||||| Sbjct 387644 CCCAGTTAAAGTCTTCACGAAAATCTGCATT 387614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412542905434288