Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq191313 109 4e-19 seq18673 93.3 3e-14 seq339907 82.4 5e-11 seq25458 82.4 5e-11 >seq191313 Length=592 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| | ||| ||||||| ||| || || ||| |||||||| |||||||| | Sbjct 112 CCGCCTCTGAGTCTCAACACCAGATGGAGAGTCGACTCCTTTTGAATGTTATAATCAGCT 171 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || |||| || | || || || ||||| || || |||||||| || | || Sbjct 172 AGAGTCCTGC-CATCCTCGAGCTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTGGGGG 230 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| |||||| ||||||| ||||| | | | ||||||| ||| || Sbjct 231 AATACCTTCCTTATCTTGAATTTTTGCCTTGACGTTGTCTATTGTATCTGAGCTCTCGAC 290 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || ||||| || |||||||||||||| |||||| Sbjct 291 CTCCAATGTGATAGTCTTCCCGGTCAAGGTCTTCACAAATATCTGCATG 339 >seq18673 Length=525508 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| | ||| ||||||| ||| || || ||| |||||||| |||||||| | Sbjct 460149 CCGCCTCTGAGTCTCAACACCAGATGGAGAGTCGACTCCTTTTGAATGTTATAATCAGCT 460208 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || |||| || | || || || ||||| || | || ||||| || | || Sbjct 460209 AGAGTCCTGC-CATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGG 460267 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||| || ||| || || ||| ||||| | |||||| Sbjct 460268 GATGCCTTCTTTGTCTTGAATCTTAGCTTTAACATTATCAATGGTATCGGAACCCTCCAC 460327 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || |||||||||||||| || || ||||| Sbjct 460328 CTCCAAAGTGATCGTTTTCCCAGTTAAAGTCTTCACGAAAATCTGCAT 460375 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| | ||| ||||||| ||| || || ||| || ||||| || ||||| | Sbjct 497615 CCGCCTCTGAGTCTCAACACCAGATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCT 497674 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | || || || ||||| || | || ||||| || | || Sbjct 497675 AGAGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGG 497734 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| ||| || ||| || || ||| ||||| | |||||| Sbjct 497735 ATGCCTTCTTTGTCTTGAATCTTAGCTTTAACATTATCAATGGTATCGGAACCCTCCACC 497794 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || |||||||||||||| || || ||||| Sbjct 497795 TCCAAAGTGATCGTTTTCCCAGTTAAAGTCTTCACGAAAATCTGCAT 497841 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| | ||| ||||||| ||| || || ||| || ||||| || ||||| | Sbjct 498071 CCGCCTCTGAGTCTCAACACCAGATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCT 498130 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | || || || ||||| || | || ||||| || | || Sbjct 498131 AGAGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGG 498190 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| ||| || ||| || || ||| ||||| | |||||| Sbjct 498191 ATGCCTTCTTTGTCTTGAATCTTAGCTTTAACATTATCAATGGTATCGGAACCCTCCACC 498250 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || |||||||||||||| || || ||||| Sbjct 498251 TCCAAAGTGATCGTTTTCCCAGTTAAAGTCTTCACGAAAATCTGCAT 498297 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| | ||| ||||||| ||| || || ||| || ||||| || ||||| | Sbjct 498527 CCGCCTCTGAGTCTCAACACCAGATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCT 498586 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | || || || ||||| || | || ||||| || | || Sbjct 498587 AGAGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGG 498646 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| ||| || ||| || || ||| ||||| | |||||| Sbjct 498647 ATGCCTTCTTTGTCTTGAATCTTAGCTTTAACATTATCAATGGTATCGGAACCCTCCACC 498706 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || |||||||||||||| || || ||||| Sbjct 498707 TCCAAAGTGATCGTTTTCCCAGTTAAAGTCTTCACGAAAATCTGCAT 498753 >seq339907 Length=279 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| || || ||| ||| |||||||| || || || | ||| |||| || Sbjct 36 CACCAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGCGTACGACCATCCTC 95 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || || || ||||| || | || ||||| || | || | |||||||| ||| Sbjct 96 GAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTG 155 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || ||| || || ||| ||||||| |||||| || | ||| || ||||| Sbjct 156 AATCTTAGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAACGTGATCGTTTT 215 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||||||||||||| || || ||||| Sbjct 216 CCCAGTTAAAGTCTTCACGAAAATCTGCAT 245 >seq25458 Length=394795 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| || || ||| ||| |||||||| || || || | ||| |||| || Sbjct 385864 CACCAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGCGTACGACCATCCTC 385805 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || || || ||||| || | || ||||| || | || | |||||||| ||| Sbjct 385804 GAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTG 385745 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || ||| || || ||| ||||||| |||||| || | ||| || ||||| Sbjct 385744 AATCTTAGCTTTAACATTATCAATGGTATCTGAACTCTCCACCTCCAACGTGATCGTTTT 385685 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||||||||||||| || || ||||| Sbjct 385684 CCCAGTTAAAGTCTTCACGAAAATCTGCAT 385655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353040483811296