Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq35681 102 2e-17 >seq35681 Length=3718 Score = 102 bits (112), Expect = 2e-17 Identities = 410/625 (66%), Gaps = 38/625 (6%) Strand=Plus/Minus Query 2404 CTCCAGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCCGGC 2463 |||||| || || |||||||| |||| ||| ||||| || | || || || || | Sbjct 661 CTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAACGCA--CGTC 604 Query 2464 ACTGTCGCCG-GTGTGGGAC--GGGTCGTAGCCAATCCAGACCGGGCGTGAGCCGAATGG 2520 | |||| || | || ||| ||||| || || | |||||||||||| | |||| || Sbjct 603 GC-GTCGTCGCGGGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGGTTGTCGAACGG 545 Query 2521 ATGGTCGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTG 2580 | | | |||| || |||| |||| ||| || || | |||||||| Sbjct 544 CCGCGGGCTGTCCGGGTCGTAGTCAGTCCATAGGCCCAAGTCG--GAATA-GCAGCGCTC 488 Query 2581 CAGCTCCTCGAACGGGAATACAGA-TGCCTTATCGTCGACAAACTCGCACATAAACAGGT 2639 ||| || || | |||| ||| || | | ||||| |||| |||||| ||||| | Sbjct 487 CAGGTCGGTCAAGGCGAATGCAGCCTGGGTGCT-GTCGATGAACTTGCACATGAACAGCT 429 Query 2640 TTTTAAAGTCCTCATCACTGTTTTCGCGTCTG-AGCTGGTCGAGGTCGAACAGGGTGCAG 2698 || ||| ||| || || || | ||| || | || |||||||||||| ||||| Sbjct 428 GTTCGAAGCGCTCTTCGTCGTACTCCAG-CTGCAGGCGCTCCAGGTCGAACAGGTTGCAG 370 Query 2699 CCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGA 2758 || ||||| | |||||| | ||| |||| | || |||||||| ||||| | ||| | Sbjct 369 CCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGGGCACAA- 311 Query 2759 AGCCCACCGGC---GAGC-GCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCACT 2814 | | ||||| || | ||||| | ||| | | | || ||| | | | Sbjct 310 --CGCGCCGGCATGGATCTGCGCTTCG-CTG--GGCCA---CGGCCCGGCCTTCT----T 263 Query 2815 GGCGCGCCCCTTGTTG---AACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAG 2871 ||||| ||||| ||| |||||| | |||| | ||||| || ||||| | Sbjct 262 TCCGCGCTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTAC 203 Query 2872 CGTGGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTT---TGCGAGGCCATGCCCGA 2928 || | || || || ||||| || |||| | ||| ||||||||||| | Sbjct 202 CGCGCTGGGCGTGGAGAAGTAGGTCAGGCGCCACT--TTTGCATGCGAGGCCATCGCGCT 145 Query 2929 GGCGACTTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTC 2988 ||| || | |||||||||| ||||| ||||||||||| | ||| |||| || | || Sbjct 144 GGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTG 85 Query 2989 GCCGTTATGGCTCTGCGCGGTGTTG 3013 ||||| | ||||||||| |||||| Sbjct 84 GCCGTGGTAGCTCTGCGCCGTGTTG 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97446473307552