Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq25458 104 2e-17 seq18673 104 2e-17 seq11878 102 7e-17 seq191313 95.1 1e-14 seq23032 91.5 1e-13 seq28025 89.7 4e-13 >seq25458 Length=394795 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||||| ||| || || |||||| |||||||||||||| || | | | | Sbjct 387378 CTCAACACTAGATGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGCTAGAGTCCTCCCA 387319 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 ||||| |||||||| || | |||| || || ||||||||| || | | ||| ||| Sbjct 387318 TCCTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGGAATGCCTTCTTTG 387259 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 || ||||| ||||| | |||| ||||| | | ||| ||| | ||| ||| Sbjct 387258 TCTTGGATTTTTGCCTTGACATTGTCTATAGTATCTGAACTCTCGACCTCTAATGTAATG 387199 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | ||||||||| |||||||||||||| Sbjct 387198 GTCTTTCCTGCGAGAGTTTTAACAAAAATCTGCAT 387164 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||||||||||| ||| | || || |||||| Sbjct 385369 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTTCGTCCATCTTCAAGCTGC 385310 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | |||| || | |||||| || || | || |||||||||| ||||| Sbjct 385309 TTCCCAGCAAAAATCAATCTCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGGATTTTT 385250 Query 48644 TGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| || | |||||||||| | | ||| ||||| || ||||| || || || Sbjct 385249 GCCTTGA-CGATGTCTATGGTATCAGAACTCTCGACCTCGAGAGTAATGGTCTTTCCTGT 385191 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || || ||||| |||||||| Sbjct 385190 CAACGTCTTAACAAATATCTGCAT 385167 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || ||| || || ||||||||||| || | ||| | |||||||||||| Sbjct 385141 TGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCTAGAGTTCGTCCATCCTCCAGCTGC 385082 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | | ||||||||| || | || ||| || ||| ||||||| Sbjct 385081 TTCCCGGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCTTTATCCTGAATTTTC 385022 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | ||||||| |||| ||| ||||| || || || || |||||| Sbjct 385021 GCCTTCACATTGTCTATGGTGTCGGAGCTCTCAACCTCGAGAGTAATAGTCTTGCCGGTG 384962 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || || || ||||| || |||||| Sbjct 384961 AGGGTCTTAACAAAGATTTGCATC 384938 >seq18673 Length=525508 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||||| ||| || | |||||| |||||||||||||| || | | | | Sbjct 466351 CTCAACACTAGATGGAGAATCGACTCCTTCTGAATGTTGTAATCGGCTAGAGTCCTCCCA 466410 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 ||||| |||||||| || | |||| || || ||||||||| || | | ||| ||| Sbjct 466411 TCCTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGGAATGCCTTCTTTG 466470 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 || ||||| ||||| | |||| ||||| | | ||| ||| | ||| ||| Sbjct 466471 TCTTGGATTTTTGCCTTGACATTGTCTATAGTATCTGAACTCTCGACCTCTAATGTAATG 466530 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||||||||| |||||||||||||| Sbjct 466531 GTCTTTCCTGTGAGAGTTTTAACAAAAATCTGCAT 466565 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||||| ||| || | |||||| |||||||||||||| || | | | | Sbjct 503580 CTCAACACTAGATGGAGAATCGACTCCTTCTGAATGTTGTAATCGGCTAGAGTCCTCCCA 503639 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 ||||| |||||||| || | |||| || || ||||||||| || | | ||| ||| Sbjct 503640 TCCTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGGAATGCCTTCTTTG 503699 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 || ||||| ||||| | |||| ||||| | | ||| ||| | ||| ||| Sbjct 503700 TCTTGGATTTTTGCCTTGACATTGTCTATAGTATCTGAACTCTCGACCTCTAATGTAATG 503759 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||||||||| |||||||||||||| Sbjct 503760 GTCTTTCCTGTGAGAGTTTTAACAAAAATCTGCAT 503794 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||| ||||| || |||||||| || | ||| | |||||||||||||| ||| || | Sbjct 462012 CTCTTTTTGGATATTGTAATCCGCTAGAGTTCGTCCATCCTCCAGCTGCTTCCCGGCGAA 462071 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | ||||||||| || | || ||| || ||| ||||||| ||| | | Sbjct 462072 GATCAGCCTCTGCTGATCAGGAGGAATACCTTCTTTATCCTGAATTTTCGCCTTCACATT 462131 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 ||||||| |||| ||| ||||| || || || || |||||||| || || || Sbjct 462132 GTCTATGGTGTCGGAGCTCTCAACCTCGAGAGTAATAGTCTTGCCGGTGAGGGTCTTAAC 462191 Query 48715 AAAAATCTGCATC 48727 ||| || |||||| Sbjct 462192 AAATATTTGCATC 462204 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||| ||||| || |||||||| || | ||| | |||||||||||||| ||| || | Sbjct 499241 CTCTTTTTGGATATTGTAATCCGCTAGAGTTCGTCCATCCTCCAGCTGCTTCCCGGCGAA 499300 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | ||||||||| || | || ||| || ||| ||||||| ||| | | Sbjct 499301 GATCAGCCTCTGCTGATCAGGAGGAATACCTTCTTTATCCTGAATTTTCGCCTTCACATT 499360 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 ||||||| |||| ||| ||||| || || || || |||||||| || || || Sbjct 499361 GTCTATGGTGTCGGAGCTCTCAACCTCGAGAGTAATAGTCTTGCCGGTGAGGGTCTTAAC 499420 Query 48715 AAAAATCTGCATC 48727 ||| || |||||| Sbjct 499421 AAATATTTGCATC 499433 >seq11878 Length=786559 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| |||||||||||||| || | || |||||| ||||||| Sbjct 516462 TGGAGAGTGGACTCCTTCTGAATGTTGTAATCCGCTAGGGTTCTTCCGTCCTGCAGCTGC 516403 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | |||| || |||||| |||||| ||| | | |||||||||| ||| ||| Sbjct 516402 TTCCCGGAGAAAATCAACCGCTGCAGATCCAGCGGGATCCCTTCCTTGTCCCAAATCTTC 516343 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 | | | | | ||||||| | ||| |||| || || ||||| || | Sbjct 516342 GATCTCACATTGTCGACCGTATCGGAACTCTCAACTTCGAGAGTAATCGTTTTGCCAGGT 516283 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || ||||||||||||||||||||| Sbjct 516282 AGGGTTTTCACAAAAATCTGCATC 516259 >seq191313 Length=592 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTC 48570 || ||||| | ||| || || ||||||||||||||| |||||||| | | | || | Sbjct 124 CTCAACACCAGATGGAGAGTCGACTCCTTTTGAATGTTATAATCAGCTAGAGTCCTGC-C 182 Query 48571 GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTT 48630 ||||| |||||||| || | |||||||||| |||||||| || | || |||||| Sbjct 183 ATCCTCGAGCTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTGGGGGAATACCTTCCTT 242 Query 48631 GTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 || |||||| ||||| |||| ||||| | ||| ||| | ||| || Sbjct 243 ATCTTGAATTTTTGCCTTGACGTTGTCTATTGTATCTGAGCTCTCGACCTCCAATGTGAT 302 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| | || |||||||| |||||||| Sbjct 303 AGTCTTCCCGGTCAAGGTCTTCACAAATATCTGCAT 338 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | ||||| | ||| | ||| || || || || ||||| ||||| ||||| Sbjct 340 CCCCCTCTCAACCGAAGCACAAGATGCAGAGTTGATTCTTTCTGAATATTGTAGTCAGCA 399 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| | || || |||||||| || | | || || | |||||| || || Sbjct 400 AGCGTTCGTCCATCTTCGAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGTGGG 459 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || ||| |||||| |||||| ||| | | |||||||||| | | ||| | Sbjct 460 ATACCTTCTTTGTCCTGAATTTTTGCCTTAACATTGTCTATGGTATCAGAACTCTCGACC 519 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || ||||| || || ||||||||||| |||||||||||||| Sbjct 520 TCGAGAGTGATGGTCTTTCCTGTGAGAGTTTTAACAAAAATCTGCAT 566 >seq23032 Length=1100947 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || |||||||| || ||||| || ||||| || ||||| Sbjct 133899 ACCACCACGGAGCCTGAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTATAGTCAGC 133840 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| ||| | |||||||||||||| ||| || | || | | ||| ||||| || Sbjct 133839 CAATGTTCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATGAGCCTCTGTTGATCTGGGGG 133780 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||||| |||| | | ||||| |||| ||| Sbjct 133779 AATCCCCTCCTTGTCCTGGATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCAAC 133720 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | |||||||| || |||||||| || || ||||| || ||||| Sbjct 133719 CTCAAGAGTTATGGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 133672 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | |||||| | || || || | ||| ||||| || ||||||||||| ||| Sbjct 134208 CCTCCCCTCAACCTAAGAACCAAGTGCAATGTCGATTCCTTCTGGATGTTGTAATCTGCC 134149 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 ||| ||| | || |||||||||||||| || | || | | |||||| || || Sbjct 134148 AATGTTCGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGA 134089 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| |||||| || | | | ||||| |||| ||| | Sbjct 134088 ATTCCCTCCTTGTCCTGAATTTTAGCTTTCACATTGTCAATGGTGTCGGAGCTCTCAACC 134029 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAA 48719 || | |||||||| || || || ||||| ||||| |||| Sbjct 134028 TCAAGAGTTATGGTCTTCCCTGTTAGAGTCTTCACGAAAA 133989 >seq28025 Length=485539 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| ||||| | | || ||||||| |||||| Sbjct 458305 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGGCCGTCCTCGAGCTGC 458246 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | || ||||| ||| || | | ||||||||| || || Sbjct 458245 TTCCCGGCGAAGATGAGGCGTTGCTGGTCCGGTGGTATCCCCTCCTTGTCCTGGATCTTG 458186 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| || | || || ||||| || |||||||| || | Sbjct 458185 GCCTTGACGTTGTCG--ATGGTGTCCGAGGATTCAACCTCGAGGGTGATGGTTTTCCCTG 458128 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||||||||| |||||||| Sbjct 458127 TTAGGGTTTTCACAAAGATCTGCAT 458103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419188605633752