Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq35003 1254 0.0 seq78578 197 6e-46 seq33768 136 2e-27 seq33767 89.7 2e-13 >seq35003 Length=5273 Score = 1254 bits (1390), Expect = 0.0 Identities = 742/773 (96%), Gaps = 4/773 (1%) Strand=Plus/Plus Query 7773 GGCTCCTTGGTGTCGTGGAAGATGTCGAGCTGCGCCAGGCCACTGCGCGCGGCATCGTTG 7832 |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 2903 GGCTCCTTAGTGTCGTGGAAGATGTCGAGCTGGGCCAGGCCCCTGCGCGCGGCATCGTTG 2962 Query 7833 AGCCAGAGGCATTCGATGCGGTCACGTGCGCCGTCGGCGAGGGCGTTCCGCTCGAGGCGG 7892 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 2963 AGCCAGAGGCATTCGATGCGGTCGCGGGCGCCGTCGGCGAGGGCGTTCCGCTCGAGGCGG 3022 Query 7893 TGCCAGTGGCGGTAAAGGCGGTCGTAGAGCGGGCAGGGGTACCCAGAGAGGACCACCATG 7952 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 3023 TGCCAGTGGCGGTAAAGGCGGTCGTAGAGCGGGCAGGGGTACCCGGAGAGGACCACCATG 3082 Query 7953 CCGGTCAACCCCTTGAGGAACGCCGCCAGGTCCCGGTGCTGGTTGTCGTCCAGTTCGTGT 8012 ||||||| |||||| |||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3083 CCGGTCAGCCCCTTAAGGAACGCCGCCAGATCCCGGTGCTGGTCGTCGTCCAGTTCGTGT 3142 Query 8013 CGGTACGACTTGCCGGTAGCGTTGTGGCGCACCTTGGTGCTGCGAGTGGAATGGACGTAG 8072 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 3143 CGGTACGACTTGCCGGTGGCGTTGTGGCGGACCTTGGTGCTGCGAGTGGAATGGACGTAG 3202 Query 8073 GGCGGATCGACGTAGTGCAGCGTGCTCGGCCGGTCGTGATGCTCCATCAGCACCAGAGCG 8132 ||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 3203 GGCGGGTCGACGTAGTGCAGCGTGCTCGGCCGGTCGTGATGCTCCATCAGC----GGGCG 3258 Query 8133 TCGCGGTTCTCGATCACCACGCCCTGTAGGCGCTCGGTGATAGAGGCCAACGCATCGGGG 8192 ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||| Sbjct 3259 TCGCGGTTCTCGATCACCACGCCTTGTAGGCGCTCGGTGATGGCGGCCAACGCATCGGGG 3318 Query 8193 TAGTTGCGCCAGTCCAGCGCGGGCGCGGTACCACTCCTCGCCGACGTTGAGCGGAACCCC 8252 |||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 3319 TAGTTGAGCCAGTCCAGCGCGGGCGTGGTACCAATCCTCGCCGACGTTGAGCGGAACCCC 3378 Query 8253 GTGCGTTCGCCGCTCGCCGCGGCGCTGCCGAATCCCTGGAAGCTGCGGACAACCATCCGC 8312 |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 3379 GTGCGTTCGCCGTTCGCCGCGGCGCTGCCGAAACCCTGGAAGCTGCGGACCACCATCCGC 3438 Query 8313 CGGGCGCGCTCGAGCGGATCCGTCGTTTCCGCGTAGCTGGCTTCGAACTCTTCACGGGCA 8372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3439 CGGGCGCGCTCGAGCGGATCCGTCGTTTCCGCGTAGCTGGCTTCGAACTCTTCACGGGCA 3498 Query 8373 AACGGGGTAAGCGCCAGGGCCTGGCGCAGTTCCTCGCCACGGTCCCGCGCGACGCGGAAC 8432 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3499 AGCGGGGTAAGCGCCAGGGCCTGGCGTAGTTCCTCGCCACGGTCCCGCGCGACGCGGAAC 3558 Query 8433 AGGTTCACCACGTCCCCGTCGAGGTCGTTGTAGACCTCGGCGTAGCTGCGGGCCTTCCGC 8492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3559 AGGTTCACCACGTCCCCGTCGAGGTCGTTGTAGACCTCGGCGTAGCTGCGGGCCTTCCGC 3618 Query 8493 AGCAGGACAGAAGCCGCGCCGCCGAAAGGCTCGATGTAGGTGTGGTGGGGCGC 8545 |||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 3619 AGCAGGACAGAAGCCGCGCCTCCGAAAGGCTCGATGTAGGTGTGGCGGGGCGC 3671 Score = 461 bits (510), Expect = 3e-125 Identities = 302/333 (91%), Gaps = 4/333 (1%) Strand=Plus/Plus Query 8682 ATGGTTGAATCGCCCACAGGGCGGCGTCCGGTGCGTGCT----GGAAGAGATAGCGCCCC 8737 || ||| || |||||||||||||||||||||||||||| |||| || |||||||| Sbjct 4910 ATAGTTTGATTGCCCACAGGGCGGCGTCCGGTGCGTGCTTGCTGGAATTGAAAGCGCCCC 4969 Query 8738 GGGTGGGGCGCTCGGCGGGTGGCGTTAGAGCGGGCGGATACTGCGCGCCACTTTCGGGTC 8797 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 4970 AGGTGGGGCGCTCGGCGGGTGGCGTTAGAGCGGGCGGATACTGCGCGCCACCTTCGGGTC 5029 Query 8798 ACGCTGGATGTAGCCTTTGTTCTCGAGGGCGGTCAGGCGCTGCTGGATGGCGAACTGGCG 8857 ||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 5030 GTGCTGGATGTGGCCTTTGTTCTCAAGGGCGGTCAGACGCTGCTGGATGGCGAACTGGCG 5089 Query 8858 GACGCCGGCCTTGGCTGCCAGTTCTGCGACGGTGGGTGCGTAGCCTTTCTCCGCCCAGAA 8917 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 5090 GACGCCGGCCTTGGCTGCCAGCTCTGCGACGGTGGGCGCGTAGCCTTTCTCCGCCCAGAA 5149 Query 8918 CGCTCGGATGTGCCCGAGCGTTTCGTTCTGCATCGTCGACGGGGCCTGCTTCACGGCTGA 8977 ||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | || Sbjct 5150 CGCTCGGATGTGCCCGAGCGTTTCGTTCTGCATCGTCGAGGGGGCCGACTTCACGACAGA 5209 Query 8978 GCCTCGCGAGATCCGTGCGCGTTCATCGCCCCG 9010 ||||||||||||||| | ||||||| |||| Sbjct 5210 ACCTCGCGAGATCCGTCTCCCTTCATCGGCCCG 5242 >seq78578 Length=1014 Score = 197 bits (218), Expect = 6e-46 Identities = 252/346 (73%), Gaps = 6/346 (2%) Strand=Plus/Plus Query 11165 CCGCCGAGCAGTTGCATGTTGCCGTTGAT---GTCGACCACTACCTCGGTGCTGTAGTGG 11221 ||||||||||| || | ||| || | |||||| || | ||||||| ||||| | Sbjct 209 CCGCCGAGCAGCTGAAGTCGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGTAGCGT 268 Query 11222 TCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGG 11281 | | ||||| | || |||| ||||||||| || ||||||||| |||| |||| Sbjct 269 TTCACTCCGTCTTTTTCC---CACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGG 325 Query 11282 GAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGG 11341 || |||||||| || | | ||||||||||| | | ||| |||| ||| || ||| Sbjct 326 CTCCCTTTTCGCAGATACTCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGG 385 Query 11342 TGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTG 11401 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 386 TGCCACTCGGTACGCTCCTGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTG 445 Query 11402 GCCAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAGATCTTGCGTCTGGATCCTGG 11461 ||||| | | | || || || || ||| |||||| | | | || || || | Sbjct 446 GCCAGGGTTATGTTCGTTACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTCGCCG 505 Query 11462 CCCAGATGGCCGACCAGGATTACCTTGTTCACTCCGCGTGCCATGG 11507 || | |||||| || || || ||||| || || |||||||||| Sbjct 506 CCGGCGTTGCCGACGAGAATCACTTTGTTGACGCCTCGTGCCATGG 551 >seq33768 Length=156001 Score = 136 bits (150), Expect = 2e-27 Identities = 213/303 (70%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 11207 TCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCT 11266 |||||| |||| | || |||||||| | | ||||| |||||| || || Sbjct 53415 TCGGTGGAGTAGCGCTCGATGCCGTCCTTGTCGGTGTACTTGTCGGTGCGCAGCGAACCC 53356 Query 11267 TCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCA 11326 |||||||||||||| ||| || |||||| | | ||||| ||||||||| ||| Sbjct 53355 TCGATGTAGACCTGCCGGCCTTTCTTCAGGTACTCGCCGGCGATCTCGGCCAGCTTGCCG 53296 Query 11327 AAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTC 11386 || ||| || |||||||| |||||||||||||| ||| |||| |||||||||| || Sbjct 53295 AACAGCTTCACGCGGTGCCATTCGGTGCGCTCCTGGCGCTCGCCGCTCTGCTTGTCGGTC 53236 Query 11387 CAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGC--CCGGGGTAGATC 11444 || ||| |||||| | | ||| ||||| || | |||| |||| |||| | Sbjct 53235 CACTGTTCCGAAGTGGCGATGCGCAGGCTGGTGATGGCGGTGCCGCTGCCGGTGTAG--C 53178 Query 11445 TTGCGTCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTTCACTCCGCGTGCCA 11504 | || ||||| ||| || | |||||| | ||| |||||||| | |||||||||| Sbjct 53177 GGGTTTCCGGATCGGCGCCTAGGTTGCCGACGATGATGACCTTGTTGATGCCGCGTGCCA 53118 Query 11505 TGG 11507 ||| Sbjct 53117 TGG 53115 >seq33767 Length=185007 Score = 89.7 bits (98), Expect = 2e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 3997 TCGCTGATGTCCTGCAGCCGCTCGACGCGTACGTCGGTGATCTCAAGCAGGATGCGGGAG 4056 ||||||||||||||||| ||||| || | ||| ||||||| || ||| ||||||| | Sbjct 117650 TCGCTGATGTCCTGCAGACGCTCCACCCACACGCCGGTGATTTCCAGCGTGATGCGGCTG 117709 Query 4057 GCCCAACGCGGCATATGGATGCTCGGCCGCCA 4088 ||||| || ||||| |||||||| || ||||| Sbjct 117710 GCCCAGCGGGGCATGTGGATGCTGGGGCGCCA 117741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 207478314420832