Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5239 168 1e-37 seq27222 156 7e-34 seq17664 156 7e-34 seq1871 147 3e-31 seq30131 143 4e-30 seq18673 143 4e-30 seq20002 127 3e-25 >seq5239 Length=679347 Score = 168 bits (186), Expect = 1e-37 Identities = 199/267 (75%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || ||||||||||||| || ||||| ||||| || || Sbjct 516067 GCCAAGCGGCACCGCA-AGGTCCTCAGAGATAACATCCAGGGCATCACAAAGCCCGCCAT 516009 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||| | || || |||||||| || || | |||| || |||| Sbjct 516008 CCGTCGTCTGGCTCGTAGGGGCGGCGTCAAGCGCATCAGCGGCCTTATCTACGAGGAGAC 515949 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||||||||| | ||| || |||| ||||||| || || || || Sbjct 515948 TCGTGGTGTGTTGAAGATCTTCTTGGAGAATGTCATCCGTGATGCTGTCACTTACACAGA 515889 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||| || || ||||||||| |||||||| | || || || | ||||| ||||| Sbjct 515888 ACATGCTCGCCGCAAAACTGTCACCGCCATGGATGTGGTGTACGCGCTCAAACGACAAGG 515829 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||| | | ||||| ||||| |||| Sbjct 515828 CCGCACCCTCTATGGATTTGGCGGTTA 515802 >seq27222 Length=8049 Score = 156 bits (172), Expect = 7e-34 Identities = 194/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || ||||||||||| || ||||||||||| || ||| Sbjct 2791 GCGAAGCGGCACCGCAAGGTTCTGCGGGATAACATCCAGGGCATCACCAAGCCGGCAATC 2850 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| |||||||| ||||| ||||| || || | |||| || |||| | Sbjct 2851 CGACGCCTGGCCCGTCGTGGCGGAGTTAAGCGCATCAGCGGCCTCATCTACGAGGAGACT 2910 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||||||| ||| ||| |||| ||| || || || |||||| Sbjct 2911 CGCGGTGTGCTCAAGATCTTCCTCGAGAACGTCATCCGTGACGCCGTCACTTACACCGAG 2970 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| || ||||| || || | |||||| |||| || || | || | |||||| Sbjct 2971 CATGCTCGCCGGAAGACGGTGACGGCTATGGATGTCGTGTACGCTCTCAAGAGGCAAGGC 3030 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 || | ||||||| ||||| |||| Sbjct 3031 CGCACTCTTTATGGATTTGGGGGTTA 3056 >seq17664 Length=264480 Score = 156 bits (172), Expect = 7e-34 Identities = 194/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || ||||||||||| || ||||||||||| || ||| Sbjct 115776 GCGAAGCGGCACCGCAAGGTTCTGCGGGATAACATCCAGGGCATCACCAAGCCGGCAATC 115835 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| |||||||| ||||| ||||| || || | |||| || |||| | Sbjct 115836 CGACGCCTGGCCCGTCGTGGCGGAGTTAAGCGCATCAGCGGCCTCATCTACGAGGAGACT 115895 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||||||| ||| ||| |||| ||| || || || |||||| Sbjct 115896 CGCGGTGTGCTCAAGATCTTCCTCGAGAACGTCATCCGTGACGCCGTCACTTACACCGAG 115955 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| || ||||| || || | |||||| |||| || || | || | |||||| Sbjct 115956 CATGCTCGCCGGAAGACGGTGACGGCTATGGATGTCGTGTACGCTCTCAAGAGGCAAGGC 116015 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 || | ||||||| ||||| |||| Sbjct 116016 CGCACTCTTTATGGATTTGGGGGTTA 116041 >seq1871 Length=1054031 Score = 147 bits (162), Expect = 3e-31 Identities = 195/268 (73%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | |||| |||| |||||||| || ||||| |||||||| || Sbjct 526842 GCAAAGCGCCACCGCA-AGGTCTTAAGAGACAACATCCAGGGCATCACAAAGCCAGCAAT 526784 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||| || || |||||||| ||||| || || || | || || |||| Sbjct 526783 TCGCCGCCTGGCCCGCCGAGGTGGAGTTAAGCGCATCAGCGGCCTGATTTACGAGGAGAC 526724 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | |||||||||||| ||| || |||| ||||||| | ||||| || Sbjct 526723 CCGTGGCGTGCTTAAGATCTTCCTCGAGAATGTCATCCGTGATGCTGTTACGTATACTGA 526664 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || || |||||||| |||| || || | || | ||||| Sbjct 526663 GCACGCTCGCCGCAAGACGGTGACGGCCATGGATGTCGTGTACGCGCTCAAGAGGCAAGG 526604 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | |||| || |||||| ||||| Sbjct 526603 CCGCACTCTTTACGGCTTTGGAGGTTAA 526576 >seq30131 Length=463314 Score = 143 bits (158), Expect = 4e-30 Identities = 179/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || ||||||||||||| || ||||| ||||| || || Sbjct 257293 GCCAAGCGCCACCGCAAGGTC-CTGAGAGATAACATCCAGGGCATCACGAAGCCGGCCAT 257351 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | ||||| ||||| |||||| || ||| || |||| || |||| Sbjct 257352 CCGGCGGCTGGCCAGGCGTGGCGGAGTGAAGCGTATCAGTGGGCTGATCTACGAGGAGAC 257411 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| | ||||||||||| ||| || |||| || ||| || ||| || || Sbjct 257412 TCGTGGTGTGCTCAAGATCTTCCTGGAGAATGTCATCCGCGACGCTGTCACCTACACGGA 257471 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| || || | ||||| ||||||| ||| | || | ||||| Sbjct 257472 GCACGCACGGCGGAAGACGGTGACGGCGATGGACGTCGTCTACGCACTCAAGAGGCAAGG 257531 Query 16672 CCG 16674 ||| Sbjct 257532 CCG 257534 >seq18673 Length=525508 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||||||||| || ||||||||||| || || || || ||||| ||| | || || | Sbjct 87380 GAGATAACATCCAGGGCATCACCAAGCCGGCAATTCGCCGGCTGGCCCGTAGAGGCGGCG 87439 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || || | |||| || |||| |||| || ||||||||||| | Sbjct 87440 TTAAGCGTATCAGCGGGCTCATCTACGAGGAGACGCGTGGGGTCCTGAAGATCTTCTTGG 87499 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || |||| || || || ||| || |||||||| || ||||| |||||| Sbjct 87500 AGAATGTCATCCGCGACGCCGTCACCTACACAGAGCACGCCCGCCGGAAGACCGTCACCG 87559 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| |||||||||| |||| | || ||||||| | ||||| ||||| ||| Sbjct 87560 CCATGGATGTCGTCTATGCTCTGAAGAGGCAGGGCCGTACCTTGTATGGATTTGGTGGTT 87619 Query 16698 AA 16699 || Sbjct 87620 AA 87621 >seq20002 Length=764687 Score = 127 bits (140), Expect = 3e-25 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| ||||| || || |||||||| |||||||| || Sbjct 758831 GATAACATCCAGGGCATCACCAAGCCGGCTATACGGCGGCTGGCTCGCCGTGGTGGCGTG 758772 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || ||| | |||| || |||| |||| ||| | |||||||||||| || Sbjct 758771 AAGCGCATCAGTGGGCTCATCTACGAGGAGACCCGTGGCGTTCTCAAGATCTTCCTCGAG 758712 Query 16580 ACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTC 16638 | || |||| || || || || || ||||||||||| || ||||| || || | Sbjct 758711 AATGTAATCCGCGACGCCGTTACA-TACACCGAGCACGCCCGCCGGAAGACCGTGACGGC 758653 Query 16639 CATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||| |||| || || | || | ||||| || | | || || ||||| Sbjct 758652 GATGGATGTCGTTTACGCTCTCAAGAGGCAAGGACGGACTCTCTACGGATTTGG 758599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78707875334136